Evidence map›Paper›PMID 17267687›Full record

ArticleMolecular biology of the cell2007

Subnuclear localization and dynamics of the Pre-mRNA 3' end processing factor mammalian cleavage factor I 68-kDa subunit.

Stefano Cardinale, Barbara Cisterna, Paolo Bonetti, Chiara Aringhieri, Marco Biggiogera, Silvia M L Barabino

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 1 pooled it
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 1 synthesis or guideline pooled it, 83 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Resolving Sub-Nuclear Architecture from Compartments to Functional Domains.International journal of molecular sciences · 2026
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  20. Perichromatin region: a moveable feast.Histochemistry and cell biology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Stefano CardinaleDepartment of Biotechnology and Biosciences, University of Milano-Bicocca, I-20126 Milan, Italy.
Barbara Cisterna
Paolo Bonetti
Chiara Aringhieri
Marco Biggiogera
Silvia M L Barabino
University of Milano-Bicocca · ITUniversity of Pavia · IT

Funding

Telethon GP0020Y01Wellcome Trust
6 · The paper itself

Abstract

Mammalian cleavage factor I (CF Im) is an essential factor that is required for the first step in pre-mRNA 3' end processing. Here, we characterize CF Im68 subnuclear distribution and mobility. Fluorescence microscopy reveals that in addition to paraspeckles CF Im68 accumulates in structures that partially overlap with nuclear speckles. Analysis of synchronized cells shows that CF Im68 distribution in speckles and paraspeckles varies during the cell cycle. At an ultrastructural level, CF Im68 is associated with perichromatin fibrils, the sites of active transcription, and concentrates in interchromatin granules-associated zones. We show that CFIm68 colocalizes with bromouridine, RNA polymerase II, and the splicing factor SC35. On inhibition of transcription, endogenous CF Im68 no longer associates with perichromatin fibrils, but it can still be detected in interchromatin granules-associated zones. These observations support the idea that not only splicing but also 3' end processing occurs cotranscriptionally. Finally, fluorescence recovery after photobleaching analysis reveals that the CF Im68 fraction associated with paraspeckles moves at a rate similar to the more dispersed molecules in the nucleoplasm, demonstrating the dynamic nature of this compartment. These findings suggest that paraspeckles are a functional compartment involved in RNA metabolism in the cell nucleus.

Indexed as

Amino Acid MotifsAnimalsBromouracilCell Nucleus StructuresChromatinDichlororibofuranosylbenzimidazoleGreen Fluorescent ProteinsHeLa CellsHumansMammalsMicroscopy, ElectronmRNA Cleavage and Polyadenylation FactorsMutationNuclear ProteinsPhotobleachingProtein Subunits5-bromouridineBromouracilChromatincleavage factor Im, humanDichlororibofuranosylbenzimidazoleGreen Fluorescent ProteinsmRNA Cleavage and Polyadenylation FactorsNuclear ProteinsProtein SubunitsRibonucleoproteinsRNARNA Polymerase IISerine-Arginine Splicing FactorsSRSF2 protein, humanUridine

Identifiers

PMID17267687
PMCPMC1838998
OpenAlexW2140428939

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.