Evidence map›Paper›PMID 17267495›Full record

ArticleJournal of virology2007

Antigenic and mutational analyses of herpes simplex virus glycoprotein B reveal four functional regions.

Florent C Bender, Minu Samanta, Ekaterina E Heldwein, Manuel Ponce de Leon, Elina Bilman, Huan Lou, J Charles Whitbeck, Roselyn J Eisenberg, Gary H Cohen

Abstract read
In one paragraph

Article in Journal of virology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed, 116 citations in OpenAlex.

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  15. Computational design of prefusion-stabilized Herpesvirus gB trimers.bioRxiv : the preprint server for biology · 2024
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38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Florent C BenderDepartment of Microbiology, University of Pennsylvania, School of Dental Medicine, 240 S. 40th Street, Levy Bldg. R217, Philadelphia, PA 19104, and Children's Hospital, Boston, MA 02115, USA. fbender@biochem.dental.upenn.edu
Minu Samanta
Ekaterina E Heldwein
Manuel Ponce de Leon
Elina Bilman
Huan Lou
J Charles Whitbeck
Roselyn J Eisenberg
Gary H Cohen
University of Dental Medicine · MMHarvard University · USUniversity of Pennsylvania · US

Funding

Studies of Herpes Simplex Virus GlycoproteinsR37AI018289 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI COHEN, GARY H · 2005 to 2014
$3.9M
STUDIES OF HERPES SIMPLEX VIRUS GLYCOPROTEINSR01AI018289 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI COHEN, GARY H · 1985 to 2019
$3.8M
Uncovering the Regulatory Role of gH/gL in HSV FusionR01AI056045 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI EISENBERG, ROSELYN J · 2004 to 2015
$3.7M
EARLY EVENTS IN HERPES SIMPLEX VIRUS ENTRYR01NS036731 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI EISENBERG, ROSELYN J · 1997 to 2006
$2.4M
Structural determinants of membrane fusion by HSV-1 gBR21AI065886 · NIAID · TUFTS UNIVERSITY BOSTON · PI HELDWEIN, EKATERINA · 2005 to 2006
$449k
HSV-Receptor Interaction in Entry and PathogenesisR21AI056045 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI EISENBERG, ROSELYN J. · 2003 to 2003
$310k
NIAID NIH HHS AI-056045NIAID NIH HHS AI-065886NIAID NIH HHS AI-18289NIAID NIH HHS R01 AI018289NIAID NIH HHS R01 AI056045NIAID NIH HHS R21 AI056045NIAID NIH HHS R21 AI065886NIAID NIH HHS R37 AI018289NINDS NIH HHS NS-36731NINDS NIH HHS R01 NS036731
6 · The paper itself

Abstract

Glycoprotein B (gB), along with gD, gH, and gL, is essential for herpes simplex virus (HSV) entry. The crystal structure of the gB ectodomain revealed it to be an elongated multidomain trimer. We generated and characterized a panel of 67 monoclonal antibodies (MAbs). Eleven of the MAbs had virus-neutralizing activity. To organize gB into functional regions within these domains, we localized the epitopes recognized by the entire panel of MAbs and mapped them onto the crystal structure of gB. Most of the MAbs were directed to continuous or discontinuous epitopes, but several recognized discontinuous epitopes that showed some resistance to denaturation, and we refer to them as pseudo-continuous. Each category contained some MAbs with neutralizing activity. To map continuous epitopes, we used overlapping peptides that spanned the gB ectodomain and measured binding by enzyme-linked immunosorbent assay. To identify discontinuous and pseudocontinuous epitopes, a purified form of the ectodomain of gB, gB(730t), was cleaved by alpha-chymotrypsin into two major fragments comprising amino acids 98 to 472 (domains I and II) and amino acids 473 to 730 (major parts of domains III, IV, and V). We also constructed a series of gB truncations to augment the other mapping strategies. Finally, we used biosensor analysis to assign the MAbs to competition groups. Together, our results identified four functional regions: (i) one formed by residues within domain I and amino acids 697 to 725 of domain V; (ii) a second formed by residues 391 to 410, residues 454 to 475, and a less-defined region within domain II; (iii) a region containing residues of domain IV that lie close to domain III; and (iv) the first 12 residues of the N terminus that were not resolved in the crystal structure. Our data suggest that multiple domains are critical for gB function.

Indexed as

Epitope MappingAntibodies, MonoclonalAntibodies, ViralBlotting, WesternEnzyme-Linked Immunosorbent AssayHerpesvirus 1, HumanModels, MolecularNeutralization TestsProtein Structure, TertiarySequence DeletionViral Envelope ProteinsAntibodies, MonoclonalAntibodies, Viralglycoprotein B, SimplexvirusViral Envelope Proteins

Identifiers

PMID17267495
PMCPMC1866100
OpenAlexW2151310245

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.