Evidence map›Paper›PMID 17260020›Full record

ArticleOncogene2007

Global DNA methylation profiling reveals silencing of a secreted form of Epha7 in mouse and human germinal center B-cell lymphomas.

D W Dawson, J S Hong, R R Shen, S W French, J J Troke, Y-Z Wu, S-S Chen, D Gui, M Regelson, Y Marahrens and 4 more

Open access · bronzeAbstract readValidation Study
In one paragraph

Article in Oncogene, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Review
  3. The role of EphA7 in different tumors.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2022
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Therapeutic targeting of EPH receptors and their ligands.Nature reviews. Drug discovery · 2014
    Review
  12. Functional genomics lead to new therapies in follicular lymphoma.Annals of the New York Academy of Sciences · 2013
    Review
  13. Pathogenesis of follicular lymphoma.The Journal of clinical investigation · 2012
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. EPH-EPHRIN in human gastrointestinal cancers.World journal of gastrointestinal oncology · 2010
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

D W DawsonDepartment of Pathology and Laboratory Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA 90095-1732, USA.
J S Hong
R R Shen
S W French
J J Troke
Y-Z Wu
S-S Chen
D Gui
M Regelson
Y Marahrens
H C Morse
J Said
C Plass
M A Teitell
University of California, Los Angeles · USCancer Genetics (United States) · USNational Institutes of Health · USThe Ohio State University · US

Funding

TUMOR CELL SURFACES AND CHROMOSOMEST32CA009056 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Gay M Crooks, David A. Nathanson · 1985 to 2026
$10.5M
UCLA Tumor Immunology Training ProgramT32CA009120 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Steven M. Dubinett, MICHAEL A TEITELL · 1985 to 2026
$10.3M
The Center for Systemic Control of Cyto-NetworksPN2EY018228 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HO, CHIH-MING · 2006 to 2010
$8.2M
RNA trafficking in mitochondriaR01GM073981 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Carla M Koehler, MICHAEL A TEITELL · 2006 to 2026
$5.1M
TCL1 ONCOGENE IN B LYMPHOCYTE DEVELOPMENT AND NEOPLASIAR01CA090571 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TEITELL, MICHAEL A · 2002 to 2015
$3.8M
LYMPHOMAS AND RETROVIRAL PATHOGENESISZ01AI000858 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI MORSE, HERBERT C · 2000 to 2008
$2.2M
A NOVEL MECHANISM OF TCL1 TUMORIGENESISR01CA107300 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TEITELL, MICHAEL A · 2004 to 2008
$1.4M
The role of the active X Chromosome in X-inactivationR01HD041451 · NICHD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MARAHRENS, YORK H · 2002 to 2006
$1.0M
Intramural NIH HHSNCI NIH HHS R01 CA090571NCI NIH HHS R01 CA107300NCI NIH HHS T32 CA009056NCI NIH HHS T32 CA009120NCI NIH HHS T32CA009120NCI NIH HHS T32CA09056NEI NIH HHS PN2 EY018228NICHD NIH HHS HD041451NICHD NIH HHS R01 HD041451NIGMS NIH HHS R01 GM073981NIGMS NIH HHS R01GM073981PHS HHS T32A107126
6 · The paper itself

Abstract

Most human lymphomas originate from transformed germinal center (GC) B lymphocytes. While activating mutations and translocations of MYC, BCL2 and BCL6 promote specific GC lymphoma subtypes, other genetic and epigenetic modifications that contribute to malignant progression in the GC remain poorly defined. Recently, aberrant expression of the TCL1 proto-oncogene was identified in major GC lymphoma subtypes. TCL1 transgenic mice offer unique models of both aggressive GC and marginal zone B-cell lymphomas, further supporting a role for TCL1 in B-cell transformation. Here, restriction landmark genomic scanning was employed to discover tumor-associated epigenetic alterations in malignant GC and marginal zone B-cells in TCL1 transgenic mice. Multiple genes were identified that underwent DNA hypermethylation and decreased expression in TCL1 transgenic tumors. Further, we identified a secreted isoform of EPHA7, a member of the Eph family of receptor tyrosine kinases that are able to influence tumor invasiveness, metastasis and neovascularization. EPHA7 was hypermethylated and repressed in both mouse and human GC B-cell non-Hodgkin lymphomas, with the potential to influence tumor progression and spread. These data provide the first set of hypermethylated genes with the potential to complement TCL1-mediated GC B-cell transformation and spread.

Indexed as

DNA MethylationGene Expression ProfilingAnimalsCell LineCell ProliferationGene SilencingGerminal CenterHumansLymphoma, B-CellMiceMice, TransgenicNeoplasm MetastasisNeoplasm TransplantationProto-Oncogene MasReceptor, EphA7MAS1 protein, humanProto-Oncogene MasReceptor, EphA7

Identifiers

PMID17260020
PMCPMC2756834
OpenAlexW2065424213

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.