Evidence map›Paper›PMID 17258073›Full record

ArticleExperimental hematology2007

High-resolution genomic arrays facilitate detection of novel cryptic chromosomal lesions in myelodysplastic syndromes.

Christine L O'Keefe, Ramon Tiu, Lukasz P Gondek, Jennifer Powers, Karl S Theil, Matt Kalaycio, Alan Lichtin, Mikkael A Sekeres, Jaroslaw P Maciejewski

Open access · greenAbstract read
In one paragraph

Article in Experimental hematology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 31 citations in OpenAlex.

  1. Relationship of treatment-related cytopenias and response to lenalidomide in patients with lower-risk myelodysplastic syndromes.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2008
    Trial
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Updates in cytogenetics and molecular markers in MDS.Current hematologic malignancy reports · 2011
    Review
  8. Article
  9. Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Christine L O'KeefeExperimental Hematology and Hematopoiesis Section, Cleveland Clinic, Cleveland, Ohio 44195, USA.
Ramon Tiu
Lukasz P Gondek
Jennifer Powers
Karl S Theil
Matt Kalaycio
Alan Lichtin
Mikkael A Sekeres
Jaroslaw P Maciejewski
Cleveland Clinic · US

Funding

Predisposition to chromosomal alterations in MDSR01HL082983 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI MACIEJEWSKI, JAROSLAW P. · 2005 to 2008
$1.5M
Training/Research Center-Bone Marrow Failure SyndromesK24HL077522 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI MACIEJEWSKI, JAROSLAW P. · 2005 to 2014
$1.2M
NHLBI NIH HHS K24 HL077522NHLBI NIH HHS R01 HL082983
6 · The paper itself

Abstract

objectiveUnbalanced chromosomal aberrations are common in myelodysplastic syndromes and have prognostic implications. An increased frequency of cytogenetic changes may reflect an inherent chromosomal instability due to failure of DNA repair. Therefore, it is likely that chromosomal defects in myelodysplastic syndromes may be more frequent than predicted by metaphase cytogenetics and new cryptic lesions may be revealed by precise analysis methods.

methodsWe used a novel high-resolution karyotyping technique, array-based comparative genomic hybridization, to investigate the frequency of cryptic chromosomal lesions in a cohort of 38 well-characterized myelodysplastic syndromes patients; results were confirmed by microsatellite quantitative PCR or single nucleotide polymorphism analysis.

resultsAs compared to metaphase karyotyping, chromosomal abnormalities detected by array-based analysis were encountered more frequently and in a higher proportion of patients. For example, chromosomal defects were found in patients with a normal karyotype by traditional cytogenetics. In addition to verifying common abnormalities, previously cryptic defects were found in new regions of the genome. Cryptic changes often overlapped chromosomes and regions frequently identified as abnormal by metaphase cytogenetics.

conclusionThe results underscore the instability of the myelodysplastic syndromes genome and highlight the utility of array-based karyotyping to study cryptic chromosomal changes which may provide new diagnostic information.

Indexed as

Chromosome AberrationsAdultAgedCells, CulturedCohort StudiesCytogenetic AnalysisFemaleHumansKaryotypingMaleMiddle AgedMinisatellite RepeatsMyelodysplastic SyndromesNucleic Acid HybridizationOligonucleotide Array Sequence AnalysisPolymerase Chain Reaction

Identifiers

PMID17258073
PMCPMC2613764
OpenAlexW2088544552

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.