Evidence map›Paper›PMID 17256149›Full record

ArticleImmunogenetics2007

The locus encoding an oligomorphic family of MHC-A alleles (Mane-A*06/Mamu-A*05) is present at high frequency in several macaque species.

Bernard A P Lafont, Christopher M McGraw, Sabriya A Stukes, Alicia Buckler-White, Ronald J Plishka, Russell A Byrum, Vanessa M Hirsch, Malcolm A Martin

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Immunogenetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.4field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Bernard A P LafontLaboratory of Molecular Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
Christopher M McGraw
Sabriya A Stukes
Alicia Buckler-White
Ronald J Plishka
Russell A Byrum
Vanessa M Hirsch
Malcolm A Martin
National Institute of Allergy and Infectious Diseases · USBioqual · USNational Institutes of Health · US

Funding

Primate Lentivirus PathogenesisZIAAI000998 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI MARTIN, MALCOLM · 2009 to 2015
$11.3M
Vaccine Studies Of Simian Immunodeficiency Virus (SIV) in MacaquesZIAAI000686 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI HIRSCH, VANESSA M. · 2009 to 2018
$10.0M
VACCINE STUDIES OF SIMIAN IMMUNODEFICIENCY VIRUS (SIV) INFECTION OF MACAQUESZ01AI000686 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI HIRSCH, VANESSA M. · 1994 to 2008
$5.2M
Primate Lentivirus PathogenesisZ01AI000998 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI MARTIN, MALCOLM · 2007 to 2008
$4.6M
MOLECULAR GENETICS OF EUKARYOTIC CELLS AND THEIR VIRUSESZ01AI000190 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI MARTIN, MALCOLM · 1985 to 2008
$4.2M
AIDS Animal Models: Cellular Immunology and ImmunogeneticsZIAAI001026 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI LAFONT, BERNARD · 2009 to 2012
$2.4M
Molecular Genetics Of Eukaryotic Cells And Their VirusesZIAAI000190 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI MARTIN, MALCOLM · 2009 to 2009
$1.8M
AIDS Animal Models: Cellular Immunology and ImmunogeneticsZ01AI001026 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI LAFONT, BERNARD · 2008 to 2008
$397k
Intramural NIH HHS
6 · The paper itself

Abstract

Several macaques species are used for HIV pathogenesis and vaccine studies, and the characterization of their major histocompatibility complex (MHC) class I genes is required to rigorously evaluate the cellular immune responses induced after immunization and/or infection. In this study, we demonstrate that the gene expressing the Mane-A*06 allele of pig-tailed macaques is an orthologue of the locus encoding the Mamu-A*05 allele family in rhesus macaques. Analysis of the distribution of this locus in a cohort of 63 pig-tailed macaques revealed that it encodes an oligomorphic family of alleles, highly prevalent (90%) in the pig-tailed macaque population. Similarly, this locus was very frequently found (62%) in a cohort of 80 Indian rhesus macaques. An orthologous gene was also detected in cynomolgus monkeys originating from four different geographical locations, but was absent in two African monkey species. Expression analysis in pig-tailed macaques revealed that the Mane-A*06 alleles encoded by this locus are transcribed at 10- to 20-fold lower levels than other MHC-A alleles (Mane-A*03 or Mane-A*10). Despite their conservation and high prevalence among Asian macaque species, the alleles of the Mane-A*06 family and, by extension their orthologues in rhesus and cynomolgus monkeys, may only modestly contribute to cellular immune responses in macaques because of their low level of expression.

Indexed as

Evolution, MolecularGene FrequencyGenes, MHC Class IPolymorphism, GeneticAllelesAmino Acid SequenceAnimalsBase SequenceGene DuplicationIntronsMacacaMolecular Sequence DataPhylogenySequence Homology, Amino Acid

Identifiers

PMID17256149
OpenAlexW1997616795

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.