Evidence map›Paper›PMID 17255935›Full record

ArticleThe EMBO journal2007

A cell cycle-dependent co-repressor mediates photoreceptor cell-specific nuclear receptor function.

Shinichiro Takezawa, Atsushi Yokoyama, Maiko Okada, Ryoji Fujiki, Aya Iriyama, Yasuo Yanagi, Hiroaki Ito, Ichiro Takada, Masahiko Kishimoto, Atsushi Miyajima and 4 more

RetractedOpen access · greenAbstract readComparative StudyRetracted Publication
In one paragraph

Article in The EMBO journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Structural insights into gene repression by the orphan nuclear receptor SHP.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  7. Article
  8. In pursuit of synthetic modulators for the orphan retina-specific nuclear receptor NR2E3.Journal of ocular pharmacology and therapeutics : the official journal of the Association for Ocular Pharmacology and Therapeutics · 2013
    Article
  9. Article
  10. Article
  11. Article
  12. Epigeneitc silencing of ribosomal RNA genes by Mybbp1a.Journal of biomedical science · 2012
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Shinichiro TakezawaThe Institute of Molecular and Cellular Biosciences, University of Tokyo, Yayoi, Bunkyo-ku, Tokyo, Japan.
Atsushi Yokoyama
Maiko Okada
Ryoji Fujiki
Aya Iriyama
Yasuo Yanagi
Hiroaki Ito
Ichiro Takada
Masahiko Kishimoto
Atsushi Miyajima
Ken-Ichi Takeyama
Kazuhiko Umesono
Hirochika Kitagawa
Shigeaki Kato
The University of Tokyo · JPJapan Science and Technology Agency · JPKyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Photoreceptor cell-specific nuclear receptor (PNR) (NR2E3) acts as a sequence-specific repressor that controls neuronal differentiation in the developing retina. We identified a novel PNR co-repressor, Ret-CoR, that is expressed in the developing retina and brain. Biochemical purification of Ret-CoR identified a multiprotein complex that included E2F/Myb-associated proteins, histone deacetylases (HDACs) and NCoR/HDAC complex-related components. Ret-CoR appeared to function as a platform protein for the complex, and interacted with PNR via two CoRNR motifs. Purified Ret-CoR complex exhibited HDAC activity, co-repressed PNR transrepression function in vitro, and co-repressed PNR function in PNR target gene promoters, presumably in the retinal progenitor cells. Notably, the appearance of Ret-CoR protein was cell-cycle-stage-dependent (from G1 to S). Therefore, Ret-CoR appears to act as a component of an HDAC co-repressor complex that supports PNR repression function in the developing retina, and may represent a co-regulator class that supports transcriptional regulator function via cell-cycle-dependent expression.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsCell CycleCell DifferentiationCell LineCell ProliferationHistone DeacetylasesMiceMultiprotein ComplexesOrphan Nuclear ReceptorsPhotoreceptor CellsReceptors, Cytoplasmic and NuclearRepressor ProteinsRNA HelicasesHistone DeacetylasesMultiprotein ComplexesNr2e3 protein, mouseOrphan Nuclear ReceptorsReceptors, Cytoplasmic and NuclearRepressor ProteinsRet-CoR protein, mouseRNA Helicases

Identifiers

PMID17255935
PMCPMC1794400
OpenAlexW2133622730

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.