Evidence map›Paper›PMID 17254850›Full record

ArticleJournal of chromatography. B, Analytical technologies in the biomedical and life sciences2007

Liquid chromatography mass spectrometry profiling of histones.

Xiaodan Su, Naduparambil K Jacob, Ravindra Amunugama, David M Lucas, Amy R Knapp, Chen Ren, Melanie E Davis, Guido Marcucci, Mark R Parthun, John C Byrd and 2 more

Abstract readValidation Study
In one paragraph

Article in Journal of chromatography. B, Analytical technologies in the biomedical and life sciences, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Chromatographic efficiency and selectivity in top-down proteomics of histones.Journal of chromatography. B, Analytical technologies in the biomedical and life sciences · 2017
    Article
  6. Histone H1 phosphorylation in breast cancer.Journal of proteome research · 2014
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Global histone profiling by LC-FTMS after inhibition and knockdown of deacetylases in human cells.Journal of chromatography. B, Analytical technologies in the biomedical and life sciences · 2009
    Article
  15. Article
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Xiaodan SuDepartment of Chemistry, Human Cancer Genetics, College of Medicine and Public Health, The Ohio State University Columbus, OH, USA.
Naduparambil K Jacob
Ravindra Amunugama
David M Lucas
Amy R Knapp
Chen Ren
Melanie E Davis
Guido Marcucci
Mark R Parthun
John C Byrd
Richard Fishel
Michael A Freitas

Funding

The Human Mismatch Repair Proteins and CarcinogenesisR01CA067007 · NCI · UNIVERSITY OF VERMONT &ST AGRIC COLLEGE · PI Richard Fishel · 1995 to 2026
$9.6M
Recombination/Repair Complex in Human CellsR01GM080176 · NIGMS · OHIO STATE UNIVERSITY · PI FISHEL, RICHARD · 2006 to 2015
$3.2M
RECOMBINATION/REPAIR COMPLEX IN HUMAN CELLSR01CA056542 · NCI · UNIVERSITY OF VERMONT &ST AGRIC COLLEGE · PI FISHEL, RICHARD · 1993 to 2005
$2.3M
Assays for Screening Histone Modifications in CancerR01CA107106 · NCI · OHIO STATE UNIVERSITY · PI FREITAS, MICHAEL A. · 2004 to 2013
$1.8M
Epigenetic Targeted Therapy for Chronic Lymphocytic Leu*R21CA110496 · NCI · OHIO STATE UNIVERSITY · PI BYRD, JOHN C · 2004 to 2005
$613k
NCI NIH HHS CA56542NCI NIH HHS CA67007NCI NIH HHS R01 CA056542NCI NIH HHS R01 CA067007NCI NIH HHS R01 CA107106NCI NIH HHS R21 CA110496NIGMS NIH HHS GM63556NIGMS NIH HHS R01 GM080176
6 · The paper itself

Abstract

Here we describe the use of reverse-phase liquid chromatography mass spectrometry (RPLC-MS) to simultaneously characterize variants and post-translationally modified isoforms for each histone. The analysis of intact proteins significantly reduces the time of sample preparation and simplifies data interpretation. LC-MS analysis and peptide mass mapping have previously been applied to identify histone proteins and to characterize their post-translational modifications. However, these studies provided limited characterization of both linker histones and core histones. The current LC-MS analysis allows for the simultaneous observation of all histone PTMs and variants (both replacement and bulk histones) without further enrichment, which will be valuable in comparative studies. Protein identities were verified by the analysis of histone H2A species using RPLC fractionation, AU-PAGE separation and nano-LC-MS/MS.

Indexed as

Amino Acid SequenceChromatography, High Pressure LiquidElectrophoresis, Polyacrylamide GelHistonesMolecular Sequence DataNanotechnologyReproducibility of ResultsTandem Mass SpectrometryHistones

Identifiers

PMID17254850
PMCPMC2694509

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.