Evidence map›Paper›PMID 17254301›Full record

ArticleBMC bioinformatics2006

Modelling study of dimerization in mammalian defensins.

Anita Suresh, Chandra Verma

Open access · goldAbstract read
In one paragraph

Article in BMC bioinformatics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Convergent evolution of defensin sequence, structure and function.Cellular and molecular life sciences : CMLS · 2017
    Review
  4. Human beta-defensin-2 increases cholinergic response in colon epithelium.Pflugers Archiv : European journal of physiology · 2010
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Anita SureshBiomolecular Modelling and Design Group, Bioinformatics Institute, 30 Biopolis Street, #07-01 Matrix, Singapore 138671. anita@bii.a-star.edu.sg
Chandra Verma
Bioinformatics Institute · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDefensins are antimicrobial peptides of innate immunity functioning by non-specific binding to anionic phospholipids in bacterial membranes. Their cationicity, amphipathicity and ability to oligomerize are considered key factors for their action. Based on structural information on human beta-defensin 2, we examine homologous defensins from various mammalian species for conserved functional physico-chemical characteristics.

resultsBased on homology greater than 40%, structural models of 8 homologs of HBD-2 were constructed. A conserved pattern of electrostatics and dynamics was observed across 6 of the examined defensins; models backed by energetics suggest that the defensins in these 6 organisms are characterized by dimerization-linked enhanced functional potentials. In contrast, dimerization is not energetically favoured in the sheep, goat and mouse defensins, suggesting that they function efficiently as monomers.

conclusionBeta-defensin 2 from some mammals may work as monomers while those in others, including humans, work as oligomers. This could potentially be used to design human defensins that may be effective at lower concentrations and hence have therapeutic benefits.

Indexed as

Models, MolecularProtein Structure, QuaternaryAnimalsbeta-DefensinsCationsCell MembraneComputer SimulationDefensinsDimerizationHumansMammalsMutagenesis, Site-DirectedSequence Alignmentbeta-DefensinsCationsDEFB4A protein, humanDefensins

Identifiers

PMID17254301
PMCPMC1764473
OpenAlexW2140922100

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.