Evidence map›Paper›PMID 17251193›Full record

ArticleNucleic acids research2007

The Lsm2-8 complex determines nuclear localization of the spliceosomal U6 snRNA.

Michael P Spiller, Kum-Loong Boon, Martin A M Reijns, Jean D Beggs

Open access · goldAbstract readComparative Study
In one paragraph

Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
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  4. Review
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  12. The cellular landscape of mid-size noncoding RNA.Wiley interdisciplinary reviews. RNA · 2019
    Review
  13. Article
  14. Article
  15. Review
  16. The choice of endogenous controls in exosomal microRNA assessments from biofluids.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Review
  17. Article
  18. Article
  19. Genome-wide association study of prognosis in advanced non-small cell lung cancer patients receiving platinum-based chemotherapy.Clinical cancer research : an official journal of the American Association for Cancer Research · 2012
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Michael P SpillerWellcome Trust Centre for Cell Biology, University of Edinburgh, King's Buildings, Mayfield Road, Edinburgh EH9 3JR, UK.
Kum-Loong Boon
Martin A M Reijns
Jean D Beggs
University of Edinburgh · GBUniversity of Manchester · GB

Funding

Wellcome TrustWellcome Trust 067311Wellcome Trust 71448
6 · The paper itself

Abstract

Lsm proteins are ubiquitous, multifunctional proteins that are involved in the processing and/or turnover of many, if not all, RNAs in eukaryotes. They generally interact only transiently with their substrate RNAs, in keeping with their likely roles as RNA chaperones. The spliceosomal U6 snRNA is an exception, being stably associated with the Lsm2-8 complex. The U6 snRNA is generally considered to be intrinsically nuclear but the mechanism of its nuclear retention has not been demonstrated, although La protein has been implicated. We show here that the complete Lsm2-8 complex is required for nuclear accumulation of U6 snRNA in yeast. Therefore, just as Sm proteins effect nuclear localization of the other spliceosomal snRNPs, the Lsm proteins mediate U6 snRNP localization except that nuclear retention is the likely mechanism for the U6 snRNP. La protein, which binds only transiently to the nascent U6 transcript, has a smaller, apparently indirect, effect on U6 localization that is compatible with its proposed role as a chaperone in facilitating U6 snRNP assembly.

Indexed as

beta KaryopherinsCell NucleusGene DeletionRibonucleoproteins, Small NuclearRNA-Binding ProteinsRNA CapsRNA, Small NuclearSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSpliceosomesbeta KaryopherinsLHP1 protein, S cerevisiaeLsm2 protein, S cerevisiaeLsm8 protein, S cerevisiaePrp24 protein, S cerevisiaeRibonucleoproteins, Small NuclearRNA-Binding ProteinsRNA CapsRNA, Small NuclearSaccharomyces cerevisiae ProteinsU6 small nuclear RNA

Identifiers

PMID17251193
PMCPMC1807951
OpenAlexW2122885571

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.