Evidence map›Paper›PMID 17244707›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

NMR structure of a complex between the VirB9/VirB7 interaction domains of the pKM101 type IV secretion system.

Richard Bayliss, Richard Harris, Loic Coutte, Amy Monier, Remi Fronzes, Peter J Christie, Paul C Driscoll, Gabriel Waksman

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Review
  3. Crystal structure of the type IV secretion system component CagX from Helicobacter pylori.Acta crystallographica. Section F, Structural biology communications · 2017
    Article
  4. Article
  5. Article
  6. Article
  7. Isolation of bacterial type IV machine subassemblies.Methods in molecular biology (Clifton, N.J.) · 2013
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Membrane-associated DNA transport machines.Cold Spring Harbor perspectives in biology · 2010
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Biological diversity of prokaryotic type IV secretion systems.Microbiology and molecular biology reviews : MMBR · 2009
    Review
  20. The structural biology of type IV secretion systems.Nature reviews. Microbiology · 2009
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Richard BaylissInstitute of Structural Molecular Biology, University College London/Birkbeck, Malet Street, London WC1E 7HX, United Kingdom.
Richard Harris
Loic Coutte
Amy Monier
Remi Fronzes
Peter J Christie
Paul C Driscoll
Gabriel Waksman

Funding

TRANSLOCATION OF DNA ACROSS THE AGROBACTERIUM ENVELOPER01GM048746 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI CHRISTIE, PETER J. · 1998 to 2018
$6.9M
TRANSLOCATION OF DNA ACROSS THE AGROBACTERIUM ENVELOPER29GM048746 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI CHRISTIE, PETER J. · 1993 to 1997
–
Medical Research Council MC_U117533887NIGMS NIH HHS GM48746NIGMS NIH HHS R01 GM048746Wellcome TrustWellcome Trust 065932
6 · The paper itself

Abstract

Type IV secretion (T4S) systems translocate DNA and protein effectors through the double membrane of Gram-negative bacteria. The paradigmatic T4S system in Agrobacterium tumefaciens is assembled from 11 VirB subunits and VirD4. Two subunits, VirB9 and VirB7, form an important stabilizing complex in the outer membrane. We describe here the NMR structure of a complex between the C-terminal domain of the VirB9 homolog TraO (TraO(CT)), bound to VirB7-like TraN from plasmid pKM101. TraO(CT) forms a beta-sandwich around which TraN winds. Structure-based mutations in VirB7 and VirB9 of A. tumefaciens show that the heterodimer interface is conserved. Opposite this interface, the TraO structure shows a protruding three-stranded beta-appendage, and here, we supply evidence that the corresponding region of VirB9 of A. tumefaciens inserts in the membrane and protrudes extracellularly. This complex structure elucidates the molecular basis for the interaction between two essential components of a T4S system.

Indexed as

Agrobacterium tumefaciensAmino Acid SequenceBacterial Outer Membrane ProteinsBacterial ProteinsDNADNA-Binding ProteinsEscherichia coli ProteinsFimbriae, BacterialMagnetic Resonance SpectroscopyMembrane ProteinsModels, MolecularMolecular Sequence DataNucleoproteinsPeriplasmic ProteinsPlasmidsProtein ConformationBacterial Outer Membrane ProteinsBacterial ProteinsDNADNA-Binding ProteinsEscherichia coli ProteinsMembrane ProteinsNucleoproteinsPeriplasmic ProteinstraK protein, E coliVirulence Factors

Identifiers

PMID17244707
PMCPMC1785264

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.