Evidence map›Paper›PMID 17237350›Full record

ArticleThe Plant cell2007

The Arabidopsis irregular xylem8 mutant is deficient in glucuronoxylan and homogalacturonan, which are essential for secondary cell wall integrity.

Staffan Persson, Kerry Hosmer Caffall, Glenn Freshour, Matthew T Hilley, Stefan Bauer, Patricia Poindexter, Michael G Hahn, Debra Mohnen, Chris Somerville

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed
38.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed, 290 citations in OpenAlex.

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64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Staffan PerssonCarnegie Institution, Stanford, California 94305, USA.
Kerry Hosmer Caffall
Glenn Freshour
Matthew T Hilley
Stefan Bauer
Patricia Poindexter
Michael G Hahn
Debra Mohnen
Chris Somerville
University of Georgia · USCarnegie Institution for Science · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The secondary cell wall in higher plants consists mainly of cellulose, lignin, and xylan and is the major component of biomass in many species. The Arabidopsis thaliana irregular xylem8 (irx8) mutant is dwarfed and has a significant reduction in secondary cell wall thickness. IRX8 belongs to a subgroup of glycosyltransferase family 8 called the GAUT1-related gene family, whose members include GAUT1, a homogalacturonan galacturonosyltransferase, and GAUT12 (IRX8). Here, we use comparative cell wall analyses to show that the irx8 mutant contains significantly reduced levels of xylan and homogalacturonan. Immunohistochemical analyses confirmed that the level of xylan was significantly reduced in the mutant. Structural fingerprinting of the cell wall polymers further revealed that irx8 is deficient in glucuronoxylan. To explore the biological function of IRX8, we crossed irx8 with irx1 (affecting cellulose synthase 8). The homozygous irx1 irx8 exhibited severely dwarfed phenotypes, suggesting that IRX8 is essential for cell wall integrity during cellulose deficiency. Taken together, the data presented show that IRX8 affects the level of glucuronoxylan and homogalacturonan in higher plants and that IRX8 provides an important link between the xylan polymer and the secondary cell wall matrix and directly affects secondary cell wall integrity.

Indexed as

ArabidopsisArabidopsis ProteinsCell FractionationCell WallCrosses, GeneticGlucosyltransferasesGlycosyltransferasesImmunohistochemistryMutationPectinsPhenotypePlant StemsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationXylansXylemArabidopsis ProteinsCESA8 protein, ArabidopsisGlucosyltransferasesglucuronoxylanGlycosyltransferasesIrx8 protein, ArabidopsisPectinspolygalacturonic acidXylans

Identifiers

PMID17237350
PMCPMC1820957
OpenAlexW2154064099

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.