Evidence map›Paper›PMID 17234882›Full record

ArticleGenes & development2007

The Spt6 SH2 domain binds Ser2-P RNAPII to direct Iws1-dependent mRNA splicing and export.

Sunnie M Yoh, Helen Cho, Loni Pickle, Ronald M Evans, Katherine A Jones

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 157 papers.

0numbers the graph read from it
0cells of the map it votes in
157citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

157 citing papers in PubMed, 262 citations in OpenAlex.

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  6. Dual Modes of Gene Regulation by CDK12.bioRxiv : the preprint server for biology · 2025
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  13. Nuclear mRNA export.Acta biochimica et biophysica Sinica · 2024
    Review
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  18. Incomplete activation ofLife science alliance · 2023
    Article
  19. Review
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97 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sunnie M YohRegulatory Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, California 92037, USA.
Helen Cho
Loni Pickle
Ronald M Evans
Katherine A Jones
Salk Institute for Biological Studies · US

Funding

CYCLIN T AND HIV1 TAT TRANSACTIVATIONR01AI044615 · NIAID · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI JONES, KATHERINE A · 1999 to 2016
$6.9M
Cyclin T and HIV1 Tat TransactivationR56AI044615 · NIAID · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI JONES, KATHERINE A · 2009 to 2009
$474k
NIAID NIH HHS AI044615-07NIAID NIH HHS R01 AI044615NIAID NIH HHS R56 AI044615
6 · The paper itself

Abstract

Spt6 promotes transcription elongation at many genes and functions as a histone H3 chaperone to alter chromatin structure during transcription. We show here that mammalian Spt6 binds Ser2-phosphorylated (Ser2P) RNA polymerase II (RNAPII) through a primitive SH2 domain, which recognizes phosphoserine rather than phosphotyrosine residues. Surprisingly, a point mutation in the Spt6 SH2 domain (R1358K) blocked binding to RNAPIIo without affecting transcription elongation rates in vitro. However, HIV-1 and c-myc RNAs formed in cells expressing the mutant Spt6 protein were longer than normal and contained splicing defects. Ectopic expression of the wild-type, but not mutant, Spt6 SH2 domain, caused bulk poly(A)+ RNAs to be retained in the nucleus, further suggesting a widespread role for Spt6 in mRNA processing or assembly of export-competent mRNP particles. We cloned the human Spt6-interacting protein, hIws1 (interacts with Spt6), and found that it associates with the nuclear RNA export factor, REF1/Aly. Depletion of endogenous hIws1 resulted in mRNA processing defects, lower levels of REF1/Aly at the c-myc gene, and nuclear retention of bulk HeLa poly(A)+ RNAs in vivo. Thus binding of Spt6 to Ser2-P RNAPII provides a cotranscriptional mechanism to recruit Iws1, REF1/Aly, and associated mRNA processing, surveillance, and export factors to responsive genes.

Indexed as

RNA Splicingsrc Homology DomainsAmino Acid SubstitutionAnimalsBlotting, Far-WesternCell NucleusDNA-(Apurinic or Apyrimidinic Site) LyaseExoribonucleasesExosome Multienzyme Ribonuclease ComplexHeLa CellsHIV-1HumansMiceNuclear ProteinsPhosphoserinePoint MutationAPEX1 protein, humanDNA-(Apurinic or Apyrimidinic Site) LyaseExoribonucleasesEXOSC10 protein, humanExosome Multienzyme Ribonuclease ComplexIws1 protein, humanNuclear ProteinsPhosphoserineProteinsRecombinant ProteinsRNA-Binding ProteinsRNA, MessengerRNA Polymerase IISupt6 protein, mouseTranscription Factors

Identifiers

PMID17234882
PMCPMC1770899
OpenAlexW2101359917

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.