Evidence map›Paper›PMID 17227857›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Structural analysis and dimerization potential of the human TAF5 subunit of TFIID.

Suparna Bhattacharya, Shinako Takada, Raymond H Jacobson

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Impact of Genome Reduction in Microsporidia.Experientia supplementum (2012) · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Zooming in on Transcription Preinitiation.Journal of molecular biology · 2016
    Review
  10. Article
  11. Structural basis of transcription initiation by RNA polymerase II.Nature reviews. Molecular cell biology · 2015
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Suparna BhattacharyaDepartment of Biochemistry and Molecular Biology, University of Texas M. D. Anderson Cancer Center and the Program in Genes and Development at the University of Texas, Graduate School in Biochemical Sciences, Houston, TX 77030, USA.
Shinako Takada
Raymond H Jacobson
The University of Texas MD Anderson Cancer Center · US

Funding

The TFIID Complex-Biophysical &Structural StudiesR01GM069769 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI TAKADA, SHINAKO · 2004 to 2008
$1.4M
NIGMS NIH HHS GM069769NIGMS NIH HHS R01 GM069769
6 · The paper itself

Abstract

TFIID is an essential factor required for RNA polymerase II transcription but remains poorly understood because of its intrinsic complexity. Human TAF5, a 100-kDa subunit of general transcription factor TFIID, is an essential gene and plays a critical role in assembling the 1.2 MDa TFIID complex. We report here a structural analysis of the TAF5 protein. Our structure at 2.2-A resolution of the TAF5-NTD2 domain reveals an alpha-helical domain with distant structural similarity to RNA polymerase II CTD interacting factors. The TAF5-NTD2 domain contains several conserved clefts likely to be critical for TFIID complex assembly. Our biochemical analysis of the human TAF5 protein demonstrates the ability of the N-terminal half of the TAF5 gene to form a flexible, extended dimer, a key property required for the assembly of the TFIID complex.

Indexed as

Crystallography, X-RayDimerizationHumansModels, MolecularProtein ConformationTATA-Binding Protein Associated FactorsTranscription Factor TFIIDTAF5 protein, humanTATA-Binding Protein Associated FactorsTranscription Factor TFIID

Identifiers

PMID17227857
PMCPMC1783120
OpenAlexW2002246210

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.