Evidence map›Paper›PMID 17224176›Full record

ArticleMechanisms of ageing and development2007

WRN exonuclease activity is blocked by DNA termini harboring 3' obstructive groups.

Jeanine A Harrigan, Jinshui Fan, Jamil Momand, Fred W Perrino, Vilhelm A Bohr, David M Wilson

Open access · greenAbstract read
In one paragraph

Article in Mechanisms of ageing and development, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
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  6. Article
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  10. APE1 is dispensable for S-region cleavage but required for its repair in class switch recombination.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. DNA repair deficiency in neurodegeneration.Progress in neurobiology · 2011
    Review
  16. Review
  17. Yeast Tdp1 regulates the fidelity of nonhomologous end joining.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Jeanine A HarriganLaboratory of Molecular Gerontology, National Institute on Aging, National Institutes of Health, Baltimore, MD 21224, United States.
Jinshui Fan
Jamil Momand
Fred W Perrino
Vilhelm A Bohr
David M Wilson
National Institutes of Health · USCalifornia State University Los Angeles · USWake Forest University · US

Funding

Mechanisms of the 3'-5' deoxyribonucleasesR01GM069962 · NIGMS · WAKE FOREST UNIVERSITY HEALTH SCIENCES · PI PERRINO, FRED W · 2004 to 2012
$2.9M
Function of RecQ helicases in genome stabilityZ01AG000726 · NIA · NATIONAL INSTITUTE ON AGING · PI BOHR, VILHELM A · 1993 to 2008
$2.9M
REPAIR OF OXIDATIVE DNA DAMAGEZ01AG000727 · NIA · NATIONAL INSTITUTE ON AGING · PI BOHR, VILHELM A · 1994 to 2008
$1.3M
Repair Mechanisms For Strand Breaks in DNAZ01AG000743 · NIA · NATIONAL INSTITUTE ON AGING · PI WILSON, DAVID M · 2002 to 2008
$932k
Intramural NIH HHS Z01 AG000743NIGMS NIH HHS GM069962NIGMS NIH HHS R01 GM069962
6 · The paper itself

Abstract

Reactive oxygen species, generated either by cellular respiration or upon exposure to environmental agents such as ionizing radiation (IR), attack DNA to form a variety of oxidized base and sugar modifications. Accumulation of oxidative DNA damage has been associated with age-related disease as well as the aging process. Single-strand breaks harboring oxidative 3' obstructive termini, e.g. 3' phosphates and 3' phosphoglycolates, must be removed prior to DNA repair synthesis or ligation. In addition, 3' tyrosyl-linked protein damage, resulting from therapeutic agents such as camptothecin (CPT), must be processed to initiate repair. Several nucleases participate in DNA repair and the excision of 3' obstructive ends. As the protein defective in the segmental progeroid Werner syndrome (WRN) possesses 3'-5' exonuclease activity, and Werner syndrome cells are hypersensitive to IR and CPT, we examined for WRN exonuclease activity on 3' blocking lesions. Moreover, we compared side-by-side the activity of four prominent human 3'-5' exonucleases (WRN, APE1, TREX1, and p53) on substrates containing 3' phosphates, phosphoglycolates, and tyrosyl residues. Our studies reveal that while WRN degrades 3' hydroxyl containing substrates in a non-processive manner, it does not excise 3' phosphate, phosphoglycolate, or tyrosyl groups. In addition, we found that APE1 was most active at excising 3' blocking termini in comparison to the disease-related exonucleases TREX1, WRN, and p53 under identical physiological reaction conditions, and that TREX1 was the most powerful 3'-5' exonuclease on undamaged oligonucleotide substrates.

Indexed as

Cells, CulturedDNADNA-(Apurinic or Apyrimidinic Site) LyaseDNA RepairExodeoxyribonucleasesGenes, p53GlycolatesHumansOligonucleotidesOxidation-ReductionProteinsReactive Oxygen SpeciesRecombinant ProteinsRecQ HelicasesTyrosineWerner Syndrome HelicaseAPEX1 protein, humanDNADNA-(Apurinic or Apyrimidinic Site) LyaseExodeoxyribonucleasesGlycolatesOligonucleotidesphosphoglycolateProteinsReactive Oxygen SpeciesRecombinant ProteinsRecQ HelicasesTyrosineWerner Syndrome HelicaseWRN protein, human

Identifiers

PMID17224176
PMCPMC1920796
OpenAlexW2084588100

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.