Evidence map›Paper›PMID 17223708›Full record

ArticleBiochemistry2007

Thermodynamic characterization of the interaction between CAR-RXR and SRC-1 peptide by isothermal titration calorimetry.

Edward Wright, Jeremy Vincent, Elias J Fernandez

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

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  17. The Nrf2 activator oltipraz also activates the constitutive androstane receptor.Drug metabolism and disposition: the biological fate of chemicals · 2008
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Edward WrightDepartment of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee 37996, USA.
Jeremy Vincent
Elias J Fernandez
University of Tennessee at Knoxville · US

Funding

Structure-Function Relationship of CARR01DK066394 · NIDDK · UNIVERSITY OF TENNESSEE KNOXVILLE · PI FERNANDEZ, ELIAS J · 2005 to 2008
$962k
NIDDK NIH HHS R01 DK066394NIDDK NIH HHS R01-DK 066394
6 · The paper itself

Abstract

The constitutive androstane receptor (CAR) enhances transcription of specific target genes that regulate several metabolic pathways. CAR functions as an obligate heterodimer (CAR-RXR) with the retinoid X receptor (RXR). Also part of the active receptor complex is the steroid receptor coactivator-1 (SRC-1) which interacts with the receptor complex via specific receptor interaction domains (RIDs). A peptide derived from SRC-1 RID2 is used to study the thermodynamic properties of the interaction with the CAR-RXR ligand binding domain (LBD) complex. In the absence of ligands for both CAR and RXR, binding of coactivator peptide to the CAR-RXR heterodimer is characterized by a favorable enthalpy change and an unfavorable entropy change. The addition of the CAR agonist, TCPOBOP, increases the affinity for coactivator by decreasing the unfavorable entropy and increasing the favorable intrinsic enthalpy of the interaction. The RXR ligand, 9-cis-RA, generates a second SRC-1 site and increases the affinity by improving the entropic component of binding. There is an additional increase in affinity for one of the two sites in the presence of both ligands. The change in heat capacity (deltaCp) is also investigated. A 2-fold difference in deltaCp is observed between liganded and unliganded CAR-RXR. The observed thermodynamic parameters for binding of SRC-1 peptide to liganded and apo CAR-RXR as well as the difference in the deltaCp data provide evidence that the apo CAR-RXR heterodimer is conformationally mobile. The more favorable enthalpic contribution for TCPOBOP-bound CAR-RXR indicates that preformation of the binding site improves the complementarity of the coactivator-receptor interaction.

Indexed as

AlitretinoinAnimalsCalorimetryConstitutive Androstane ReceptorHistone AcetyltransferasesLigandsMiceNuclear Receptor Coactivator 1Protein Structure, TertiaryPyridinesReceptors, Cytoplasmic and NuclearReceptors, SteroidRetinoid X ReceptorsThermodynamicsTranscription FactorsTretinoin1,4-bis(2-(3,5-dichloropyridyloxy))benzeneAlitretinoinConstitutive Androstane ReceptorHistone AcetyltransferasesLigandsNcoa1 protein, mouseNuclear Receptor Coactivator 1PyridinesReceptors, Cytoplasmic and NuclearReceptors, SteroidRetinoid X ReceptorsTranscription FactorsTretinoin

Identifiers

PMID17223708
PMCPMC2518310
OpenAlexW2131991380

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.