Evidence map›Paper›PMID 17220229›Full record

ArticleJournal of bacteriology2007

FNR is a global regulator of virulence and anaerobic metabolism in Salmonella enterica serovar Typhimurium (ATCC 14028s).

Ryan C Fink, Matthew R Evans, Steffen Porwollik, Andres Vazquez-Torres, Jessica Jones-Carson, Bryan Troxell, Stephen J Libby, Michael McClelland, Hosni M Hassan

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
11.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 150 citations in OpenAlex.

  1. Article
  2. How Salmonella Works Under Osmotic and Desiccation Stresses.Comprehensive reviews in food science and food safety · 2026
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  8. OFrontiers in cellular and infection microbiology · 2025
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  11. Critical role ofApplied and environmental microbiology · 2024
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  14. Anaerobiosis, a neglected factor in phage-bacteria interactions.Applied and environmental microbiology · 2023
    Article
  15. Article
  16. Article
  17. Universal Stress Proteins: From Gene to Function.International journal of molecular sciences · 2023
    Review
  18. Strategies of Pathogens to Escape from NO-Based Host Defense.Antioxidants (Basel, Switzerland) · 2022
    Review
  19. Article
  20. Article

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Ryan C FinkDepartment of Microbiology, North Carolina State University, Raleigh, NC 27695-7615, USA.
Matthew R Evans
Steffen Porwollik
Andres Vazquez-Torres
Jessica Jones-Carson
Bryan Troxell
Stephen J Libby
Michael McClelland
Hosni M Hassan
North Carolina State University · USSidney Kimmel Cancer Center · USUniversity of Colorado Health · USUniversity of Washington · US

Funding

Salmonella evasion of NADPH oxidase-dependent killingR01AI054959 · NIAID · UNIVERSITY OF COLORADO DENVER · PI VAZQUEZ-TORRES, ANDRES · 2003 to 2018
$5.2M
SALMONELLA GENES REQUIRED FOR SURVIVAL IN THE MACROPHAGER01AI022933 · NIAID · SCRIPPS RESEARCH INSTITUTE · PI HEFFRON, FRED L · 1987 to 2013
$4.6M
Comparative Genomics in the EnterobateriaceaeR01AI052237 · NIAID · WASHINGTON UNIVERSITY · PI WEINSTOCK, GEORGE M · 2002 to 2009
$4.1M
The SlyA Regulon in Salmonella PathogenesisR01AI048622 · NIAID · UNIVERSITY OF WASHINGTON · PI LIBBY, STEPHEN JAMES · 2003 to 2010
$2.4M
DETAILED RESTRICTION MAP--SALMONELLA TYPHIMURIUM GENOMER01AI034829 · NIAID · SIDNEY KIMMEL CANCER CENTER · PI MCCLELLAND, MICHAEL · 1993 to 2006
$1.9M
Systemic immunity induced by mucosal CD18+ cellsK01RR016082 · NCRR · UNIVERSITY OF COLORADO DENVER · PI JONES-CARSON, JESSICA L · 2001 to 2005
$657k
Analysis of intracellular host defenses in Salmonella pathogenesisR56AI054959 · NIAID · UNIVERSITY OF COLORADO DENVER · PI VAZQUEZ-TORRES, ANDRES · 2008 to 2008
$378k
Salmonella Gene Expression in Complex EnvironmentsR21AI057733 · NIAID · SIDNEY KIMMEL CANCER CENTER · PI MCCLELLAND, MICHAEL · 2004 to 2004
$345k
THE SLYA REGULON IN SALMONELLA PATHOGENESISR21AI048622 · NIAID · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI LIBBY, STEPHEN JAMES · 2001 to 2001
$189k
NCRR NIH HHS K01 RR016082NCRR NIH HHS RR16082NIAID NIH HHS AI054959NIAID NIH HHS AI48622NIAID NIH HHS R01 AI022933NIAID NIH HHS R01AI022933NIAID NIH HHS R01 AI034829NIAID NIH HHS R01AI034829NIAID NIH HHS R01 AI048622NIAID NIH HHS R01 AI052237NIAID NIH HHS R01 AI054959NIAID NIH HHS R01AI52237NIAID NIH HHS R21 AI048622NIAID NIH HHS R21 AI057733NIAID NIH HHS R21AI057733NIAID NIH HHS R56 AI054959
6 · The paper itself

Abstract

Salmonella enterica serovar Typhimurium must successfully transition the broad fluctuations in oxygen concentrations encountered in the host. In Escherichia coli, FNR is one of the main regulatory proteins involved in O2 sensing. To assess the role of FNR in serovar Typhimurium, we constructed an isogenic fnr mutant in the virulent wild-type strain (ATCC 14028s) and compared their transcriptional profiles and pathogenicities in mice. Here, we report that, under anaerobic conditions, 311 genes (6.80% of the genome) are regulated directly or indirectly by FNR; of these, 87 genes (28%) are poorly characterized. Regulation by FNR in serovar Typhimurium is similar to, but distinct from, that in E. coli. Thus, genes/operons involved in aerobic metabolism, NO. detoxification, flagellar biosynthesis, motility, chemotaxis, and anaerobic carbon utilization are regulated by FNR in a fashion similar to that in E. coli. However, genes/operons existing in E. coli but regulated by FNR only in serovar Typhimurium include those coding for ethanolamine utilization, a universal stress protein, a ferritin-like protein, and a phosphotransacetylase. Interestingly, Salmonella-specific genes/operons regulated by FNR include numerous virulence genes within Salmonella pathogenicity island 1 (SPI-1), newly identified flagellar genes (mcpAC, cheV), and the virulence operon (srfABC). Furthermore, the role of FNR as a positive regulator of motility, flagellar biosynthesis, and pathogenesis was confirmed by showing that the mutant is nonmotile, lacks flagella, is attenuated in mice, and does not survive inside macrophages. The inability of the mutant to survive inside macrophages is likely due to its sensitivity to the reactive oxygen species generated by NADPH phagocyte oxidase.

Indexed as

Gene Expression Regulation, BacterialAnaerobiosisAnimalsBacterial ProteinsCells, CulturedDNA-Binding ProteinsEscherichia coli ProteinsGene Expression ProfilingHumansIron-Sulfur ProteinsMacrophages, PeritonealMiceMice, Inbred C57BLMolecular Sequence DataMutationOligonucleotide Array Sequence AnalysisBacterial ProteinsDNA-Binding ProteinsEscherichia coli ProteinsFNR protein, E coliIron-Sulfur ProteinsTranscription Factors

Identifiers

PMID17220229
PMCPMC1899381
OpenAlexW2138197344

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.