Evidence map›Paper›PMID 17220225›Full record

ArticleJournal of bacteriology2007

An unusual response regulator influences sporulation at early and late stages in Streptomyces coelicolor.

Yuqing Tian, Kay Fowler, Kim Findlay, Huarong Tan, Keith F Chater

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Two-Component Systems ofInternational journal of molecular sciences · 2022
    Review
  4. Review
  5. Article
  6. Review
  7. Article
  8. Molecular regulation of antibiotic biosynthesis in streptomyces.Microbiology and molecular biology reviews : MMBR · 2013
    Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Autoregulation of antibiotic biosynthesis by binding of the end product to an atypical response regulator.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Yuqing TianState Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100080, People's Republic of China.
Kay Fowler
Kim Findlay
Huarong Tan
Keith F Chater
Chinese Academy of Sciences · CNMicrobiology Institute of Shaanxi · CNNorwich Research Park · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

WhiI, a regulator required for efficient sporulation septation in the aerial mycelium of Streptomyces coelicolor, resembles response regulators of bacterial two-component systems but lacks some conserved features of typical phosphorylation pockets. Four amino acids of the abnormal "phosphorylation pocket" were changed by site-directed mutagenesis. Unlike whiI null mutations, these point mutations did not interfere with sporulation septation but had various effects on spore maturation. Transcriptome analysis was used to compare gene expression in the wild-type strain, a D27A mutant (pale gray spores), a D69E mutant (wild-type spores), and a null mutant (white aerial mycelium, no spores) (a new variant of PCR targeting was used to introduce the point mutations into the chromosomal copy of whiI). The results revealed 45 genes that were affected by the deletion of whiI. Many of these showed increased expression in the wild type at the time when aerial growth and development were taking place. About half of them showed reduced expression in the null mutant, and about half showed increased expression. Some, but not all, of these 45 genes were also affected by the D27A mutation, and a few were affected by the D69E mutation. The results were consistent with a model in which WhiI acts differently at sequential stages of development. Consideration of the functions of whiI-influenced genes provides some insights into the physiology of aerial hyphae. Mutation of seven whiI-influenced genes revealed that three of them play roles in spore maturation.

Indexed as

Amino Acid SubstitutionBacterial ProteinsBase SequenceConserved SequenceDNA-Binding ProteinsDNA PrimersGene Expression Regulation, BacterialGenetic Complementation TestMolecular Sequence DataOligonucleotide Array Sequence AnalysisPhosphoproteinsPhosphorylationPoint MutationSequence DeletionSpores, BacterialStreptomyces coelicolorBacterial ProteinsDNA-Binding ProteinsDNA PrimersPhosphoproteinsWhiA protein, Streptomyces coelicolor

Identifiers

PMID17220225
PMCPMC1855786
OpenAlexW2160007100

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.