Evidence map›Paper›PMID 17218314›Full record

ArticleThe Journal of biological chemistry2007

Export pathway selectivity of Escherichia coli twin arginine translocation signal peptides.

Danielle Tullman-Ercek, Matthew P DeLisa, Yasuaki Kawarasaki, Pooya Iranpour, Brian Ribnicky, Tracy Palmer, George Georgiou

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
8.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 129 citations in OpenAlex.

  1. Review
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  9. The biogenesis of β-lactamase enzymes.Microbiology (Reading, England) · 2022
    Review
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  20. Review

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Danielle Tullman-ErcekDepartment of Chemical Engineering, Institute for Cell and Molecular Biology, University of Texas, Austin 78712, USA.
Matthew P DeLisa
Yasuaki Kawarasaki
Pooya Iranpour
Brian Ribnicky
Tracy Palmer
George Georgiou
The University of Texas at Austin · USCornell University · USUniversity of East Anglia · GB

Funding

Genetic Analysis of the Escherichia coli Tat PathwayR01GM069872 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI GEORGIOU, GEORGE GEORGIOU · 2004 to 2007
$936k
Medical Research Council G117/519NIGMS NIH HHS R0-01 GM069872NIGMS NIH HHS R01 GM069872
6 · The paper itself

Abstract

The Escherichia coli genome encodes at least 29 putative signal peptides containing a twin arginine motif characteristic of proteins exported via the twin arginine translocation (Tat) pathway. Fusions of the putative Tat signal peptides plus six to eight amino acids of the mature proteins to three reporter proteins (short-lived green fluorescent protein, maltose-binding protein (MBP), and alkaline phosphatase) and also data from the cell localization of epitope-tagged full-length proteins were employed to determine the ability of the 29 signal peptides to direct export through the Tat pathway, through the general secretory pathway (Sec), or through both. 27/29 putative signal peptides could export one or more reporter proteins through Tat. Of these, 11 signal peptides displayed Tat specificity in that they could not direct the export of Sec-only reporter proteins. The rest (16/27) were promiscuous and were capable of directing export of the appropriate reporter either via Tat (green fluorescent protein, MBP) or via Sec (PhoA, MBP). Mutations that conferred a >or=+1 charge to the N terminus of the mature protein abolished or drastically reduced routing through the Sec pathway without affecting the ability to export via the Tat pathway. These experiments demonstrate that the charge of the mature protein N terminus affects export promiscuity, independent of the effect of the folding state of the mature protein.

Indexed as

Protein Sorting SignalsAmino Acid SequenceBiological TransportComputational BiologyEscherichia coliEscherichia coli ProteinsGenome, BacterialGreen Fluorescent ProteinsMembrane Transport ProteinsMolecular Sequence DataMutationPlasmidsProtein FoldingProtein Structure, TertiarySubcellular FractionsEscherichia coli ProteinsGreen Fluorescent ProteinsMembrane Transport ProteinsProtein Sorting Signalstwin-arginine translocase complex, E coli

Identifiers

PMID17218314
PMCPMC2730154
OpenAlexW2110084884

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.