Evidence map›Paper›PMID 17218081›Full record

ArticleGenomics2007

Fine-mapping and comprehensive transcript analysis reveals nonsynonymous variants within a novel 1.17 Mb blood pressure QTL region on rat chromosome 10.

Yasser Saad, Michael R Garrett, Ezhilarasi Manickavasagam, Shane Yerga-Woolwine, Phyllis Farms, Tracy Radecki, Bina Joe

Open access · greenAbstract read
In one paragraph

Article in Genomics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 34 citations in OpenAlex.

  1. Single Nucleotide Polymorphism ofHypertension (Dallas, Tex. : 1979) · 2020
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  11. Construction of two novel reciprocal conplastic rat strains and characterization of cardiac mitochondria.American journal of physiology. Heart and circulatory physiology · 2013
    Article
  12. Molecular mechanisms of experimental salt-sensitive hypertension.Journal of the American Heart Association · 2012
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  13. Article
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  17. Mitochondrial polymorphisms in rat genetic models of hypertension.Mammalian genome : official journal of the International Mammalian Genome Society · 2010
    Article
  18. Article
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  20. Closely linked non-additive blood pressure quantitative trait loci.Mammalian genome : official journal of the International Mammalian Genome Society · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yasser SaadDepartment of Physiology, Pharmacology, Metabolism, and Cardiovascular Sciences, University of Toledo, Health Science Campus, 3035 Arlington Avenue, Toledo, OH 43614-5804, USA.
Michael R Garrett
Ezhilarasi Manickavasagam
Shane Yerga-Woolwine
Phyllis Farms
Tracy Radecki
Bina Joe
University of Toledo · US

Funding

Genetics of HypertensionR01HL020176 · NHLBI · UNIVERSITY OF TOLEDO HEALTH SCI CAMPUS · PI JOE, BINA · 1985 to 2017
$8.1M
NHLBI NIH HHS R01 HL020176PHS HHS R01
6 · The paper itself

Abstract

The presence of blood pressure (BP) quantitative trait loci (QTL) on rat chromosome 10 has been clearly demonstrated by linkage analysis and substitution mapping. Using congenic strains containing the LEW rat chromosomal segments on the Dahl salt-sensitive (S) rat background, further iterations of congenic substrains were constructed and characterized to fine-map a chromosome 10 region (QTL1) linked to blood pressure. Comparison of seven congenic substrains refined QTL1 to a 1.17 Mb segment flanked by D10Mco88 and D10Mco89, which are located at 71,513,116 and 72,684,774 bp, respectively. The newly defined QTL1, containing 18 genes, is captured in its entirety within a single congenic substrain. A thorough transcript analysis revealed that 3 of these 18 genes, Ccl5, Ddx52, and RGD1559577, had nonsynonymous allelic variations between the S rat and the LEW rat. None of the detected transcripts within the newly defined QTL1 are implicated directly in BP control in humans or model organisms. Therefore, the present work defines a novel blood pressure QTL with three potential quantitative trait nucleotides.

Indexed as

Chromosome MappingQuantitative Trait LociAnimalsBlood PressureChromosomes, MammalianGenetic VariationMiceMice, CongenicRatsRats, Inbred DahlRats, Inbred LewSpecies SpecificityTelemetryTranscription, Genetic

Identifiers

PMID17218081
PMCPMC1808207
OpenAlexW2105950006

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.