Evidence map›Paper›PMID 17216494›Full record

ArticleHuman genetics2007

Genetic variation in tumor necrosis factor and lymphotoxin-alpha (TNF-LTA) and breast cancer risk.

Mia M Gaudet, Kathleen M Egan, Jolanta Lissowska, Polly A Newcomb, Louise A Brinton, Linda Titus-Ernstoff, Meredith Yeager, Stephen Chanock, Robert Welch, Beata Peplonska and 2 more

Abstract read
PubMed Publisher
In one paragraph

Article in Human genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 6 pooled it
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 6 syntheses or guidelines pooled it, 72 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Association between the tumor necrosis factor alpha gene -308G> A polymorphism and the risk of breast cancer: a meta-analysis.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
    Pooled it
  4. Positive association between lymphotoxin-alpha variation rs909253 and cancer risk: a meta-analysis based on 36 case-control studies.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2014
    Pooled it
  5. TNF-β +252 A>G polymorphism and susceptibility to cancer.Journal of cancer research and clinical oncology · 2013
    Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 2 countries.

Mia M GaudetDivision of Cancer Epidemiology and Genetics, National Cancer Institute, National Institutes of Health, Department of Health and Human Services, Bethesda, MD, USA. gaudetm@mail.nih.gov
Kathleen M Egan
Jolanta Lissowska
Polly A Newcomb
Louise A Brinton
Linda Titus-Ernstoff
Meredith Yeager
Stephen Chanock
Robert Welch
Beata Peplonska
Amy Trentham-Dietz
Montserrat Garcia-Closas
National Cancer Institute · USNational Institutes of Health · USCotton (United States) · USFred Hutch Cancer Center · USNofer Institute of Occupational Medicine · PLThe Maria Sklodowska-Curie National Research Institute of Oncology · PLVanderbilt University Medical Center · US

Funding

HORMONE-RELATED CANCERSZ01CP010126 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI BRINTON, LOUISE · 1996 to 2008
$11.2M
RISK FACTORS AND BIOMARKERS FOR IN SITU BREAST CANCERR01CA067264 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI TRENTHAM-DIETZ, AMY · 1996 to 2013
$3.6M
PHYSICAL ACTIVITY, LIFESTYLE AND OVARIAN CANCER RISKR01CA047147 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI NEWCOMB, POLLY A · 1988 to 2007
$2.6M
MOLECULAR STUDY OF HOST RESPONSE/GENETIC RISK FACTORS OF INFECTION COMPLICATIONZ01SC010083 · SC · CLINICAL SCIENCES · PI CHANOCK, STEPHEN J · 1997 to 2007
$1.1M
RISK FACTORS AND BIOMARKERS FOR IN SITU BREAST CANCERR01CA067338 · NCI · DARTMOUTH COLLEGE · PI TITUS-ERNSTOFF, LINDA · 1996 to 1999
–
HORMONES, LIFESTYLE AND BREAST CANCERR01CA047305 · NCI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI EGAN, KATHLEEN · 1988 to 1999
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HORMONES, LIFESTYLE, AND BREAST CANCERR01CA069664 · NCI · DARTMOUTH COLLEGE · PI TITUS-ERNSTOFF, LINDA · 1996 to 1999
–
Intramural NIH HHSNCI NIH HHS CA47147NCI NIH HHS CA69664NCI NIH HHS R01 CA47305NCI NIH HHS R01 CA67264NCI NIH HHS R01 CA67338
6 · The paper itself

Abstract

Tumor necrosis factor (TNF) is critical to regulation of inflammation. Genetic variation in the promoter region of TNF has been associated with expression differences, and a range of auto-immune, infectious, and oncologic diseases. We analyzed eight common single nucleotide polymorphisms (SNPs) (rs746868, rs909253, rs1799964, rs1800630, rs1800750, rs1800629, rs361525, and rs1800610) to capture most of the genetic variation in TNF in addition to SNPs in lymphotoxin-alpha (LTA), a pro-inflammatory cytokine in linkage disequilibrium with the TNF promoter region. SNPs were genotyped in a USA population-based case-control study (3,318 cases, 2,841 controls). Promising results were followed-up in an independent population-based case-control study in Poland (2,228 cases, 2,378 controls). In both studies, women carrying the variant allele of rs361525 were at elevated breast cancer risk compared to the GG genotype (per allele OR = 1.18, 95% CI 1.04-1.35; P for trend = 0.008). Other SNPs were not significantly associated with breast cancer risk. Haplotype analyses did not reveal any additional associations between TNF and breast cancer risk. Data from 5,269 cases and 4,982 controls suggested that the rs361525 A allele, located in the TNF promoter region, was associated with a modest increase in breast cancer risk. Additional studies are required to replicate these findings and to determine whether rs361525 is a causative SNP or is a marker of a causative SNP.

Indexed as

Polymorphism, Single NucleotideAdultAgedBreast NeoplasmsCase-Control StudiesFemaleGenetic Predisposition to DiseaseGenotypeHumansLymphotoxin-alphaMiddle AgedOdds RatioPromoter Regions, GeneticRiskTumor Necrosis Factor-alphaLymphotoxin-alphaTumor Necrosis Factor-alpha

Identifiers

PMID17216494
OpenAlexW2001169541

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.