Evidence map›Paper›PMID 17215348›Full record

ArticleJournal of clinical microbiology2007

Contrasting geographic distribution profiles of the herpes simplex virus type 1 BgOL and BgKL variants in Japan suggest dispersion and replacement.

Hiroyuki Eda, Shigeru Ozawa, Cooperation Group for HSV-1 RFLP Variant Study, Kamesaburo Yoshino, Kazuo Yanagi

Abstract read
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Article in Journal of clinical microbiology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

5 authors.

Hiroyuki EdaHerpesvirus Laboratory, Department of Virus I, National Institute of Infectious Diseases, Toyama 1-23-1, Shinjuku-ku, Tokyo 162-8640, Japan.
Shigeru Ozawa
Cooperation Group for HSV-1 RFLP Variant Study
Kamesaburo Yoshino
Kazuo Yanagi

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thelifelong latent infection-reactivation mode of infection of herpes simplex virus type 1 (HSV-1) transmitted by close contact has allowed a diversity of restriction fragment length polymorphism (RFLP) variations to accumulate in human populations. Whether and how the variants of the HSV-1 that is ubiquitous worldwide spread to different human populations is not clear. In our previous study the geographically gradient distribution of the HSV-1 BgK(L) variant, which is a good marker for the BgK(L):SaCFJ(M):SaGH(M):SaD/E(L):KpM(S) variant, suggested that BgK(L) dispersed geographically. Southern hybridization analyses showed that in BgK(L) the BglII cleavage site between the BglII K and small "Q/#13" fragments is lost, the SalI cleavage sites between the SalI J and C and between SalI F and J fragments are lost, and the SalI E fragment is abnormally large (SaE(L) variation). The RFLP and geographic distribution of one more HSV-1 RFLP variant, BgO(L), were comparatively analyzed. The BglII cleavage site between the BglII O and Q/#13 fragments is lost in BgOL. BgO(L) clinical isolates were not associated with any of the SaCFJ(M), SaE(L), SaGH(M), or KpM(S) variations, whereas one-fourth of the non-BgO(L):non-BgK(L) isolates was associated with SaCFJ(M) and SaGH(M), indicating that BgK(L) and BgO(L) are distant in terms of diversification. BgO(L) is distributed highly in the northeastern region and the southwestern island of Kyushu but is rare between the two regions in Japan, in a remarkable contrast to BgK(L). These are the first epidemiologic data to show contrasting geographic distribution profiles of two HSV-1 variants and suggest the gradual dispersion and replacement of HSV-1 variants.

Indexed as

Genetic VariationBacterial ProteinsBase SequenceBlotting, SouthernDeoxyribonucleases, Type II Site-SpecificDNA, ViralHerpes SimplexHerpesvirus 1, HumanHumansJapanMolecular Sequence DataNucleic Acid HybridizationPolymorphism, Restriction Fragment LengthPrevalenceBacterial ProteinsBglII endonucleaseDeoxyribonucleases, Type II Site-SpecificDNA, Viral

Identifiers

PMID17215348
PMCPMC1829117

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.