ArticleBMC genomics2007
Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists.
Article in BMC genomics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
20 citing papers in PubMed, 68 citations in OpenAlex.
- A gene duplication of a septin reveals a developmentally regulated filament length control mechanism.The Journal of cell biology · 2023Article
- Metabolic engineering of Ashbya gossypii for limonene production from xylose.Biotechnology for biofuels and bioproducts · 2022Article
- Role ofJournal of fungi (Basel, Switzerland) · 2021Article
- A case of convergent-gene interference in the budding yeast knockout library causing chromosome instability.G3 (Bethesda, Md.) · 2021Article
- Sporulation inJournal of fungi (Basel, Switzerland) · 2020Review
- Bioproduction of riboflavin: a bright yellow history.Journal of industrial microbiology & biotechnology · 2017Review
- Utilization of xylose by engineered strains ofBiotechnology for biofuels · 2017Article
- Metabolic engineering of riboflavin production in Ashbya gossypii through pathway optimization.Microbial cell factories · 2015Article
- Engineering Ashbya gossypii for efficient biolipid production.Bioengineered · 2015Article
- Investigation of protein secretion and secretion stress in Ashbya gossypii.BMC genomics · 2014Article
- Article
- Molecular and functional characterization of an invertase secreted by Ashbya gossypii.Molecular biotechnology · 2014Article
- Alternative splicing regulates targeting of malate dehydrogenase in Yarrowia lipolytica.DNA research : an international journal for rapid publication of reports on genes and genomes · 2012Article
- Active transposition in genomes.Annual review of genetics · 2012Review
- Regulation of exit from mitosis in multinucleate Ashbya gossypii cells relies on a minimal network of genes.Molecular biology of the cell · 2011Article
- Structural mutants of the spindle pole body cause distinct alteration of cytoplasmic microtubules and nuclear dynamics in multinucleated hyphae.Molecular biology of the cell · 2010Article
- Combined phylogeny and neighborhood analysis of the evolution of the ABC transporters conferring multiple drug resistance in hemiascomycete yeasts.BMC genomics · 2009Article
- Functional annotations for the Saccharomyces cerevisiae genome: the knowns and the known unknowns.Trends in microbiology · 2009Review
- Phosphoribosyl pyrophosphate synthetase activity affects growth and riboflavin production in Ashbya gossypii.BMC biotechnology · 2008Article
- A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae.BMC biology · 2007Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors at 2 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe Ashbya Genome Database (AGD) 3.0 is an innovative cross-species genome and transcriptome browser based on release 40 of the Ensembl developer environment. DESCRIPTION: AGD 3.0 provides information on 4726 protein-encoding loci and 293 non-coding RNA genes present in the genome of the filamentous fungus Ashbya gossypii. A synteny viewer depicts the chromosomal location and orientation of orthologous genes in the budding yeast Saccharomyces cerevisiae. Genome-wide expression profiling data obtained with high-density oligonucleotide microarrays (GeneChips) are available for nearly all currently annotated protein-coding loci in A. gossypii and S. cerevisiae.
conclusionAGD 3.0 hence provides yeast- and genome biologists with comprehensive report pages including reliable DNA annotation, Gene Ontology terms associated with S. cerevisiae orthologues and RNA expression data as well as numerous links to external sources of information. The database is accessible at http://agd.vital-it.ch/.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.