Evidence map›Paper›PMID 17209131›Full record

ArticleJournal of medical genetics2007

Mitotic recombination as evidence of alternative pathogenesis of gastrointestinal stromal tumours in neurofibromatosis type 1.

Douglas R Stewart, Christopher L Corless, Brian P Rubin, Michael C Heinrich, Ludwine M Messiaen, Lisa J Kessler, Paul J Zhang, David G Brooks

Open access · bronzeAbstract readCase ReportsLetter
In one paragraph

Article in Journal of medical genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 63 citations in OpenAlex.

  1. Pooled it
  2. Review
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  8. Article
  9. Review
  10. Review
  11. Periampullary and duodenal neoplasms in neurofibromatosis type 1: two cases and an updated 20-year review of the literature yielding 76 cases.Journal of gastrointestinal surgery : official journal of the Society for Surgery of the Alimentary Tract · 2010
    Review
  12. Gastrointestinal and retroperitoneal manifestations of type 1 neurofibromatosis.Journal of gastrointestinal surgery : official journal of the Society for Surgery of the Alimentary Tract · 2010
    Review
  13. Article
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  15. Article
  16. Article
  17. Article
  18. Review
  19. Gastrointestinal bleeding and cutaneous nodules.Proceedings (Baylor University. Medical Center) · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Douglas R Stewart
Christopher L Corless
Brian P Rubin
Michael C Heinrich
Ludwine M Messiaen
Lisa J Kessler
Paul J Zhang
David G Brooks
Hospital of the University of Pennsylvania · USOregon Health & Science University · USNational Institutes of Health · USUniversity of Alabama at Birmingham · USUniversity of Washington Medical Center · US

Funding

Variation in Gene Expression in Neurofibromatosis Type 1Z01HG200329 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BIESECKER, LESLIE · 2005 to 2008
$1.0M
Intramural NIH HHS
6 · The paper itself

Abstract

backgroundNeurofibromatosis type 1 (NF1) is a neurocutaneous disorder resulting in the growth of a variety of tumours, and is inherited in an autosomal dominant pattern. Gastrointestinal stromal tumours (GISTs) are mesenchymal tumours that commonly harbour oncogenic mutations in KIT or PDGFRA and are thought to arise from the interstitial cells of Cajal (ICC; the pacemaker cells of the gut).

aimTo characterise two patients with NF1 and GISTs.

methodsTwo patients were genotyped for germline mutations in NF1. GISTs from both patients were genotyped for somatic mutations in KIT and PDGFRA. Loss of heterozygosity (LOH) of NF1 in one GIST was assessed by genotyping seven microsatellite markers spanning 2.39 Mb of the NF1 locus in the tumour and in genomic DNA. The known germline mutation in NF1 was confirmed in GIST DNA by sequencing. The copy number of the mutated NF1 allele was determined by multiplex ligand-dependent probe amplification.

resultsGISTs from both patients were of wild type for mutations in KIT and PDGFRA. In the GIST with adequate DNA, all seven markers were informative and showed LOH at the NF1 locus; sequencing of NF1 from that GIST showed no wild-type sequence, suggesting that it was lost in the tumour. Multiplex ligand-dependent probe amplification analysis showed that two copies of all NF1 exons were present.

conclusionsThis is the first evidence of mitotic recombination resulting in a reduction to homozygosity of a germline NF1 mutation in an NF1-associated GIST. We hypothesise that the LOH of NF1 and lack of KIT and PDGFRA mutations are evidence of an alternative pathogenesis in NF1-associated GISTs.

Indexed as

MitosisRecombination, GeneticAdultAntigens, CD34Breast NeoplasmsFemaleGastrointestinal Stromal TumorsGenes, Neurofibromatosis 1Germ-Line MutationHumansLoss of HeterozygosityMaleMiddle AgedNeurofibromatosis 1Proto-Oncogene Proteins c-kitReceptor, Platelet-Derived Growth Factor alphaAntigens, CD34Proto-Oncogene Proteins c-kitReceptor, Platelet-Derived Growth Factor alpha

Identifiers

PMID17209131
PMCPMC2597901
OpenAlexW2055091572

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.