ArticleJournal of bacteriology2007
Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX.
Article in Journal of bacteriology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
65 citing papers in PubMed, 208 citations in OpenAlex.
- Genome mining and screening for plastic-degrading potential in marine bacteria.Applied microbiology and biotechnology · 2026Article
- High-quality de novo genome assembly and functional genomic insights into Thermobifida alba DSM43795Biologia futura · 2025Article
- Whole genome sequence of Arthrobacter sp. from Iloilo City landfill soil unveils potential plastic biodegradation genes.Biodegradation · 2025Article
- Biochemical characterization of an esterase from Thermobifida fusca YX with acetyl xylan esterase activity.Molecular biology reports · 2024Article
- Recent advances in the biodegradation of polyethylene terephthalate with cutinase-like enzymes.Frontiers in microbiology · 2023Review
- Structural Insights into (Tere)phthalate-Ester Hydrolysis by a Carboxylesterase and Its Role in Promoting PET Depolymerization.ACS catalysis · 2022Article
- Recent Advances in Biological Recycling of Polyethylene Terephthalate (PET) Plastic Wastes.Bioengineering (Basel, Switzerland) · 2022Review
- A thermostable and CBM2-linked GH10 xylanase fromFrontiers in bioengineering and biotechnology · 2022Article
- The Effects of Carbon Source and Growth Temperature on the Fatty Acid Profiles ofFrontiers in molecular biosciences · 2022Article
- Detoxification Esterase StrH Initiates Strobilurin Fungicide Degradation inApplied and environmental microbiology · 2021Article
- Expression, purification and crystal structure determination of a ferredoxin reductase from the actinobacterium Thermobifida fusca.Acta crystallographica. Section F, Structural biology communications · 2020Article
- De novo genome assembly and comparative annotation reveals metabolic versatility in cellulolytic bacteria from cropland and forest soils.Functional & integrative genomics · 2020Article
- Novel Synergistic Mechanism for Lignocellulose Degradation by a Thermophilic Filamentous Fungus and a Thermophilic Actinobacterium Based on Functional Proteomics.Frontiers in microbiology · 2020Article
- Characterization of a NovelViruses · 2019Article
- Current knowledge on enzymatic PET degradation and its possible application to waste stream management and other fields.Applied microbiology and biotechnology · 2019Review
- Heterologous and in Vitro Reconstitution of Fuscanodin, a Lasso Peptide from Thermobifida fusca.Journal of the American Chemical Society · 2019Article
- Expression and secretion of a lytic polysaccharide monooxygenase by a fast-growing cyanobacterium.Biotechnology for biofuels · 2019Article
- Characterisation of novel biomass degradation enzymes from the genome of Cellulomonas fimi.Enzyme and microbial technology · 2018Article
- Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen.Nature communications · 2018Article
- Biodiversity of the microbial mat of the Garga hot spring.BMC evolutionary biology · 2017Article
5 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
13 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Thermobifida fusca is a moderately thermophilic soil bacterium that belongs to Actinobacteria. It is a major degrader of plant cell walls and has been used as a model organism for the study of secreted, thermostable cellulases. The complete genome sequence showed that T. fusca has a single circular chromosome of 3,642,249 bp predicted to encode 3,117 proteins and 65 RNA species with a coding density of 85%. Genome analysis revealed the existence of 29 putative glycoside hydrolases in addition to the previously identified cellulases and xylanases. The glycosyl hydrolases include enzymes predicted to exhibit mainly dextran/starch- and xylan-degrading functions. T. fusca possesses two protein secretion systems: the sec general secretion system and the twin-arginine translocation system. Several of the secreted cellulases have sequence signatures indicating their secretion may be mediated by the twin-arginine translocation system. T. fusca has extensive transport systems for import of carbohydrates coupled to transcriptional regulators controlling the expression of the transporters and glycosylhydrolases. In addition to providing an overview of the physiology of a soil actinomycete, this study presents insights on the transcriptional regulation and secretion of cellulases which may facilitate the industrial exploitation of these systems.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.