Evidence map›Paper›PMID 17205308›Full record

ArticleHistochemistry and cell biology2007

Differentiation-specific association of HP1alpha and HP1beta with chromocentres is correlated with clustering of TIF1beta at these sites.

Eva Bártová, Jirí Pacherník, Alois Kozubík, Stanislav Kozubek

Abstract read
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In one paragraph

Article in Histochemistry and cell biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

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  9. TRIM proteins and cancer.Nature reviews. Cancer · 2011
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  10. Bromodomains as therapeutic targets.Expert reviews in molecular medicine · 2011
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  15. Review
  16. Histone modifications and nuclear architecture: a review.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2008
    Review
  17. Article
  18. Single-cell c-myc gene expression in relationship to nuclear domains.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2008
    Article
  19. Recent progress in histochemistry.Histochemistry and cell biology · 2007
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Eva BártováInstitute of Biophysics, Academy of Sciences of the Czech Republic, Královopolská 135, 612 65, Brno, Czech Republic. bartova@ibp.cz
Jirí Pacherník
Alois Kozubík
Stanislav Kozubek
Czech Academy of Sciences · CZMasaryk University · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mammalian heterochromatin protein 1 (HP1alpha, HP1beta, HP1gamma subtypes) and transcriptional intermediary factor TIF1beta play an important role in the regulation of chromatin structure and function. Here, we investigated the nuclear arrangement of these proteins during differentiation of embryonal carcinoma P19 cells into primitive endoderm and into the neural pathway. Additionally, the differentiation potential of trichostatin A (TSA) and 5-deoxyazacytidine (5-dAzaC) was studied. In 70% of the cells from the neural pathway and in 20% of TSA-stimulated cells, HP1alpha and HP1beta co-localized and associated with chromocentres (clusters of centromeres), which correlated with clustering of TIF1beta at these heterochromatic regions. The cell types that we studied were also characterized by a pronounced focal distribution of HP1gamma. The above-mentioned nuclear patterns of HP1 and TIF1beta proteins were completely different from the nuclear patterns observed in the remaining cell types investigated, in which HP1alpha was associated with chromocentres while HP1beta and HP1gamma were largely localized in distinct nuclear regions. Moreover, a dispersed nuclear distribution of TIF1beta was observed. Our findings showed that the nuclear arrangement of HP1 subtypes and TIF1beta is differentiation specific, and seems to be more important than changes in the levels of these proteins, which were relatively stable during all the induced differentiation processes.

Indexed as

AnimalsAzacitidineBlotting, WesternCell DifferentiationCell Line, TumorCell NucleusCentromereChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneDecitabineDNA MethylationEnzyme InhibitorsGreen Fluorescent ProteinsHistone Deacetylase InhibitorsHydroxamic AcidsImmunohistochemistryAzacitidineChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneDecitabineEnzyme InhibitorsGreen Fluorescent ProteinsHistone Deacetylase InhibitorsHydroxamic AcidsNuclear ProteinsProtein SubunitsRecombinant Fusion Proteinstranscriptional intermediary factor 1Transcription Factorstrichostatin A

Identifiers

PMID17205308
OpenAlexW2073127919

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.