Evidence map›Paper›PMID 17202207›Full record

ArticleJournal of virology2007

Efficient DNA packaging of bacteriophage PRD1 requires the unique vertex protein P6.

Nelli J Karhu, Gabija Ziedaite, Dennis H Bamford, Jaana K H Bamford

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 26 citations in OpenAlex.

  1. Assembly and Evolution of Poxviruses.Advances in experimental medicine and biology · 2024
    Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Condensed genome structure.Advances in experimental medicine and biology · 2012
    Review
  7. Review
  8. Review
  9. Article
  10. An icosahedral algal virus has a complex unique vertex decorated by a spike.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Nelli J KarhuDepartment of Biological and Environmental Science, Institute of Biotechnology, University of Helsinki, Biocenter 2, Viikinkaari 5, FIN-00014 University of Helsinki, Finland.
Gabija Ziedaite
Dennis H Bamford
Jaana K H Bamford
Biocenter Finland · FIUniversity of Helsinki · FIUniversity of Jyväskylä · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The assembly of bacteriophage PRD1 proceeds via formation of empty procapsids containing an internal lipid membrane, into which the linear double-stranded DNA genome is subsequently packaged. The packaging ATPase P9 and other putative packaging proteins have been shown to be located at a unique vertex of the PRD1 capsid. Here, we describe the isolation and characterization of a suppressor-sensitive PRD1 mutant deficient in the unique vertex protein P6. Protein P6 was found to be an essential part of the PRD1 packaging machinery; its absence leads to greatly reduced packaging efficiency. Lack of P6 was not found to affect particle assembly, because in the P6-deficient mutant infection, wild-type (wt) amounts of particles were produced, although most were empty. P6 was determined not to be a specificity factor, as the few filled particles seen in the P6-deficient infection contained only PRD1-specific DNA. The presence of P6 was not necessary for retention of DNA in the capsid once packaging had occurred, and P6-deficient DNA-containing particles were found to be stable and infectious, albeit not as infectious as wt PRD1 virions. A packaging model for bacteriophage PRD1, based on previous results and those obtained in this study, is presented.

Indexed as

DNA PackagingVirus AssemblyBacteriophage PRD1MutationSalmonella entericaViral ProteinsVirionphage phi29 protein p6Viral Proteins

Identifiers

PMID17202207
PMCPMC1865968
OpenAlexW2045695048

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.