ArticleNucleic acids research2007
SYSTOMONAS--an integrated database for systems biology analysis of Pseudomonas.
Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Attenuated Strains of Pseudomonas aeruginosa: A Promising Cell Factory for Rhamnolipid Production.Microbial biotechnology · 2025Review
- Panomics to decode virulence and fitness in Gram-negative bacteria.Frontiers in cellular and infection microbiology · 2022Article
- Review
- Metabolomic studies of Pseudomonas aeruginosa.World journal of microbiology & biotechnology · 2019Review
- PAMDB: a comprehensive Pseudomonas aeruginosa metabolome database.Nucleic acids research · 2018Article
- Clinical decision support systems for improving diagnostic accuracy and achieving precision medicine.Journal of clinical bioinformatics · 2015Article
- Regulatory and metabolic networks for the adaptation of Pseudomonas aeruginosa biofilms to urinary tract-like conditions.PloS one · 2013Article
- The Regulatory Network of Pseudomonas aeruginosa.Microbial informatics and experimentation · 2011Article
- Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes.Nucleic acids research · 2011Article
- Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions.Database : the journal of biological databases and curation · 2010Article
- Reconstruction of metabolic pathways for the cattle genome.BMC systems biology · 2009Article
- HMDB: a knowledgebase for the human metabolome.Nucleic acids research · 2009Article
- Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes.Nucleic acids research · 2009Article
- PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes.Nucleic acids research · 2009Article
- A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory.BMC systems biology · 2008Article
- A combined computational-experimental analyses of selected metabolic enzymes in Pseudomonas species.International journal of biological sciences · 2008Article
Corrections and comments
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Authors and funding
20 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
To provide an integrated bioinformatics platform for a systems biology approach to the biology of pseudomonads in infection and biotechnology the database SYSTOMONAS (SYSTems biology of pseudOMONAS) was established. Besides our own experimental metabolome, proteome and transcriptome data, various additional predictions of cellular processes, such as gene-regulatory networks were stored. Reconstruction of metabolic networks in SYSTOMONAS was achieved via comparative genomics. Broad data integration is realized using SOAP interfaces for the well established databases BRENDA, KEGG and PRODORIC. Several tools for the analysis of stored data and for the visualization of the corresponding results are provided, enabling a quick understanding of metabolic pathways, genomic arrangements or promoter structures of interest. The focus of SYSTOMONAS is on pseudomonads and in particular Pseudomonas aeruginosa, an opportunistic human pathogen. With this database we would like to encourage the Pseudomonas community to elucidate cellular processes of interest using an integrated systems biology strategy. The database is accessible at http://www.systomonas.de.
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Registered trials
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