ArticleNucleic acids research2007
BRENDA, AMENDA and FRENDA: the enzyme information system in 2007.
Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
60 citing papers in PubMed.
- ReprogrammingmBio · 2026Article
- Enzyme Databases in the Era of Omics and Artificial Intelligence.International journal of molecular sciences · 2023Review
- Genome-Scale Metabolic Model Driven Design of a Defined Medium forFrontiers in microbiology · 2020Article
- From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes.Computational and structural biotechnology journal · 2020Review
- An Integrated Approach to Recognize Potential Protective Effects of Culinary Herbs Against Chronic Diseases.Journal of healthcare informatics research · 2019Article
- To what extent do structural changes in catalytic metal sites affect enzyme function?Journal of inorganic biochemistry · 2018Article
- BRENDA in 2017: new perspectives and new tools in BRENDA.Nucleic acids research · 2017Article
- Uptake and Metabolism of Antibiotics Roseoflavin and 8-Demethyl-8-Aminoriboflavin in Riboflavin-Auxotrophic Listeria monocytogenes.Journal of bacteriology · 2016Article
- Alternative Biotransformation of Retinal to Retinoic Acid or Retinol by an Aldehyde Dehydrogenase from Bacillus cereus.Applied and environmental microbiology · 2016Article
- Many InChIs and quite some feat.Journal of computer-aided molecular design · 2015Article
- Metabolic reconstruction identifies strain-specific regulation of virulence in Toxoplasma gondii.Molecular systems biology · 2013Article
- Applying systems biology methods to the study of human physiology in extreme environments.Extreme physiology & medicine · 2013Article
- Sequencing and annotation of the Ophiostoma ulmi genome.BMC genomics · 2013Article
- Identification of new sphingomyelinases D in pathogenic fungi and other pathogenic organisms.PloS one · 2013Article
- A collaborative environment for developing and validating predictive tools for protein biophysical characteristics.Journal of computer-aided molecular design · 2012Article
- Computational modeling of mitochondrial function.Methods in molecular biology (Clifton, N.J.) · 2012Article
- High similarity of phylogenetic profiles of rate-limiting enzymes with inhibitory relation in Human, Mouse, Rat, budding Yeast and E. coli.BMC genomics · 2011Article
- A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature.BMC bioinformatics · 2011Article
- The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods.Journal of structural and functional genomics · 2011Article
- Shotgun sequencing of Yersinia enterocolitica strain W22703 (biotype 2, serotype O:9): genomic evidence for oscillation between invertebrates and mammals.BMC genomics · 2011Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The BRENDA (BRaunschweig ENzyme DAtabase) enzyme information system (http://www.brenda.uni-koeln.de) is the largest publicly available enzyme information system worldwide. The major parts of its contents are manually extracted from primary literature. It is not restricted to specific groups of enzymes, but includes information on all identified enzymes irrespective of the enzyme's source. The range of data encompasses functional, structural, sequence, localisation, disease-related, isolation, stability information on enzyme and ligand-related data. Each single entry is linked to the enzyme source and to a literature reference. Recently the data repository was complemented by text-mining data in AMENDA (Automatic Mining of ENzyme DAta) and FRENDA (Full Reference ENzyme DAta). A genome browser, membrane protein prediction and full-text search capacities were added. The newly implemented web service provides instant access to the data for programmers via a SOAP (Simple Object Access Protocol) interface. The BRENDA data can be downloaded in the form of a text file from the beginning of 2007.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.