ArticleNucleic acids research2007
TBestDB: a taxonomically broad database of expressed sequence tags (ESTs).
Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.
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Who cites it
47 citing papers in PubMed.
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- Gene transfers from diverse bacteria compensate for reductive genome evolution in the chromatophore of Paulinella chromatophora.Proceedings of the National Academy of Sciences of the United States of America · 2016Article
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- Environmental selection pressures related to iron utilization are involved in the loss of the flavodoxin gene from the plant genome.Genome biology and evolution · 2015Article
- Microalgae as sustainable renewable energy feedstock for biofuel production.BioMed research international · 2015Review
- Analysis of EST data of the marine protist Oxyrrhis marina, an emerging model for alveolate biology and evolution.BMC genomics · 2014Article
- Amoebozoa possess lineage-specific globin gene repertoires gained by individual horizontal gene transfers.International journal of biological sciences · 2014Article
- Agrigenomics for microalgal biofuel production: an overview of various bioinformatics resources and recent studies to link OMICS to bioenergy and bioeconomy.Omics : a journal of integrative biology · 2013Review
- The scale and evolutionary significance of horizontal gene transfer in the choanoflagellate Monosiga brevicollis.BMC genomics · 2013Article
- Evidence for a hydrogenosomal-type anaerobic ATP generation pathway in Acanthamoeba castellanii.PloS one · 2013Article
- Article
- Ancient gene transfer from algae to animals: mechanisms and evolutionary significance.BMC evolutionary biology · 2012Article
- Phylogenetic analysis of mitochondrial outer membrane β-barrel channels.Genome biology and evolution · 2012Article
- A new protein superfamily: TPPP-like proteins.PloS one · 2012Article
- Article
- Microarray analysis of differentially expressed genes between cysts and trophozoites of Acanthamoeba castellanii.The Korean journal of parasitology · 2011Article
- The phylogenomic analysis of the anaphase promoting complex and its targets points to complex and modern-like control of the cell cycle in the last common ancestor of eukaryotes.BMC evolutionary biology · 2011Article
- Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes.Proceedings of the National Academy of Sciences of the United States of America · 2011Article
- Evidence for acquisition of virulence effectors in pathogenic chytrids.BMC evolutionary biology · 2011Article
- Ancestral and derived protein import pathways in the mitochondrion of Reclinomonas americana.Molecular biology and evolution · 2011Article
Corrections and comments
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The TBestDB database contains approximately 370,000 clustered expressed sequence tag (EST) sequences from 49 organisms, covering a taxonomically broad range of poorly studied, mainly unicellular eukaryotes, and includes experimental information, consensus sequences, gene annotations and metabolic pathway predictions. Most of these ESTs have been generated by the Protist EST Program, a collaboration among six Canadian research groups. EST sequences are read from trace files up to a minimum quality cut-off, vector and linker sequence is masked, and the ESTs are clustered using phrap. The resulting consensus sequences are automatically annotated by using the AutoFACT program. The datasets are automatically checked for clustering errors due to chimerism and potential cross-contamination between organisms, and suspect data are flagged in or removed from the database. Access to data deposited in TBestDB by individual users can be restricted to those users for a limited period. With this first report on TBestDB, we open the database to the research community for free processing, annotation, interspecies comparisons and GenBank submission of EST data generated in individual laboratories. For instructions on submission to TBestDB, contact tbestdb@bch.umontreal.ca. The database can be queried at http://tbestdb.bcm.umontreal.ca/.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.