Evidence map›Paper›PMID 17202162›Full record

ArticleNucleic acids research2007

New developments in the InterPro database.

Nicola J Mulder, Rolf Apweiler, Teresa K Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard Copley and 35 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 237 papers.

0numbers the graph read from it
0cells of the map it votes in
237citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

237 citing papers in PubMed.

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  15. Expansion and Functional Diversification ofInternational journal of molecular sciences · 2019
    Article
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  19. The genome sequence of sweet cherry (Prunus avium) for use in genomics-assisted breeding.DNA research : an international journal for rapid publication of reports on genes and genomes · 2017
    Article
  20. Article

177 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

45 authors.

Nicola J MulderEMBL Outstation-European Bioinformatics Institute Hinxton, Cambridge, UK. mulder@ebi.ac.uk
Rolf Apweiler
Teresa K Attwood
Amos Bairoch
Alex Bateman
David Binns
Peer Bork
Virginie Buillard
Lorenzo Cerutti
Richard Copley
Emmanuel Courcelle
Ujjwal Das
Louise Daugherty
Mark Dibley
Robert Finn
Wolfgang Fleischmann
Julian Gough
Daniel Haft
Nicolas Hulo
Sarah Hunter
Daniel Kahn
Alexander Kanapin
Anish Kejariwal
Alberto Labarga
Petra S Langendijk-Genevaux
David Lonsdale
Rodrigo Lopez
Ivica Letunic
Martin Madera
John Maslen
Craig McAnulla
Jennifer McDowall
Jaina Mistry
Alex Mitchell
Anastasia N Nikolskaya
Sandra Orchard
Christine Orengo
Robert Petryszak
Jeremy D Selengut
Christian J A Sigrist
Paul D Thomas
Franck Valentin
Derek Wilson
Cathy H Wu
Corin Yeats

Funding

Biotechnology and Biological Sciences Research Council BB/F010435/1Medical Research Council G0100305Wellcome Trust 087656
6 · The paper itself

Abstract

InterPro is an integrated resource for protein families, domains and functional sites, which integrates the following protein signature databases: PROSITE, PRINTS, ProDom, Pfam, SMART, TIGRFAMs, PIRSF, SUPERFAMILY, Gene3D and PANTHER. The latter two new member databases have been integrated since the last publication in this journal. There have been several new developments in InterPro, including an additional reading field, new database links, extensions to the web interface and additional match XML files. InterPro has always provided matches to UniProtKB proteins on the website and in the match XML file on the FTP site. Additional matches to proteins in UniParc (UniProt archive) are now available for download in the new match XML files only. The latest InterPro release (13.0) contains more than 13 000 entries, covering over 78% of all proteins in UniProtKB. The database is available for text- and sequence-based searches via a webserver (http://www.ebi.ac.uk/interpro), and for download by anonymous FTP (ftp://ftp.ebi.ac.uk/pub/databases/interpro). The InterProScan search tool is now also available via a web service at http://www.ebi.ac.uk/Tools/webservices/WSInterProScan.html.

Indexed as

Databases, ProteinInternetProteinsProtein Structure, TertiarySequence Analysis, ProteinSystems IntegrationUser-Computer InterfaceProteins

Identifiers

PMID17202162
PMCPMC1899100

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.