Evidence map›Paper›PMID 17202161›Full record

ArticleNucleic acids research2007

GenBank.

Dennis A Benson, Ilene Karsch-Mizrachi, David J Lipman, James Ostell, David L Wheeler

Abstract read
In one paragraph

Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 192 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
192citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

192 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. PeculiarGenes · 2024
    Article
  8. Identification of a new species ofInternational journal for parasitology. Parasites and wildlife · 2024
    Article
  9. Article
  10. New species ofInternational journal for parasitology. Parasites and wildlife · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Panomics to decode virulence and fitness in Gram-negative bacteria.Frontiers in cellular and infection microbiology · 2022
    Article
  17. Article
  18. Article
  19. Article
  20. High-throughput Sequencing in Vaccine Research.Journal of veterinary research · 2021
    Article

132 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Dennis A BensonNational Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Ilene Karsch-Mizrachi
David J Lipman
James Ostell
David L Wheeler

Funding

Comparative GenomicsZIALM000077 · NLM · NATIONAL LIBRARY OF MEDICINE · PI LIPMAN, DAVID J. · 2009 to 2017
$1.4M
WHOLE DATABASE AND WHOLE GENOME COMPARISON TOOLZ01LM000077 · NLM · NATIONAL LIBRARY OF MEDICINE · PI LIPMAN, DAVID J. · 1997 to 2008
$139k
NCBI Production Resource DevelopmentZ01LM000160 · NLM · NATIONAL LIBRARY OF MEDICINE · PI OSTELL, JAMES M · 2002 to 2006
–
6 · The paper itself

Abstract

GenBank (R) is a comprehensive database that contains publicly available nucleotide sequences for more than 240 000 named organisms, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects. Most submissions are made using the web-based BankIt or standalone Sequin programs and accession numbers are assigned by GenBank staff upon receipt. Daily data exchange with the EMBL Data Library in Europe and the DNA Data Bank of Japan ensures worldwide coverage. GenBank is accessible through NCBI's retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, begin at the NCBI Homepage (www.ncbi.nlm.nih.gov).

Indexed as

Databases, Nucleic AcidAnimalsBase SequenceDNA, ComplementaryExpressed Sequence TagsGenomicsHumansInternetNational Library of Medicine (U.S.)Sequence Tagged SitesUnited StatesUser-Computer InterfaceDNA, Complementary

Identifiers

PMID17202161
PMCPMC1781245

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.