Evidence map›Paper›PMID 17200667›Full record

ArticleThe pharmacogenomics journal2007

Nucleotide sequence variation within the human tyrosine kinase B neurotrophin receptor gene: association with antisocial alcohol dependence.

K Xu, T R Anderson, K M Neyer, N Lamparella, G Jenkins, Z Zhou, Q Yuan, M Virkkunen, R H Lipsky

Open access · greenAbstract read
In one paragraph

Article in The pharmacogenomics journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
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  5. Review
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  9. Article
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  14. Effects of MAOA-genotype, alcohol consumption, and aging on violent behavior.Alcoholism, clinical and experimental research · 2009
    Article
  15. ERGR: An ethanol-related gene resource.Nucleic acids research · 2009
    Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

K XuSections on Molecular Genetics and Human Genetics, Laboratory of Neurogenetics, National Institute on Alcohol Abuse and Alcoholism, National Institutes of Health, Bethesda, MD, USA.
T R Anderson
K M Neyer
N Lamparella
G Jenkins
Z Zhou
Q Yuan
M Virkkunen
R H Lipsky
National Institutes of Health · USNational Institute on Alcohol Abuse and Alcoholism · USUniversity of Helsinki · FI

Funding

Integrative genetics with high throughput, multiplex genZ01AA000301 · NIAAA · NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM · PI GOLDMAN, DAVID · 1999 to 2008
$5.2M
Molecular Genetics of Brain Derived Neurotrophic Factor (BDNF)Z01AA000326 · NIAAA · NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM · PI LIPSKY, ROBERT H · 2004 to 2008
$1.1M
Molecular Genetics Of Glutamate FunctionZ01AA000325 · NIAAA · NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM · PI LIPSKY, ROBERT H · 2001 to 2008
$1.0M
Intramural NIH HHS Z01 AA000325Intramural NIH HHS Z01 AA000326Intramural NIH HHS Z99 AA999999
6 · The paper itself

Abstract

To identify sequence variants in genes that may have roles in neuronal responses to alcohol, we resequenced the 5' region of tyrosine kinase B neurotrophin receptor gene (NTRK2) and determined linkage disequilibrium (LD) values, haplotype structure, and performed association analyses using 43 single nucleotide polymorphisms (SNPs) covering the entire NTRK2 region in a Finnish Caucasian sample of 229 alcohol-dependent subjects with antisocial personality disorder (ASPD) and 287 healthy controls. Individually, three SNPs were associated with alcohol dependence and alcohol abuse (AD) (P-value from 0.0019 to 0.0059, significance level was set at P<or=0.01 corrected for multiple testing), whereas a common 18 locus haplotype within the largest LD block of NTRK2, a 119-kb region containing the 5' flanking region and exons 1-15, was marginally overrepresented in control subjects compared to AD individuals (global P=0.057). Taken together, these results support a role for the NTRK2 gene in addiction in a Caucasian population with AD and a subtype of ASPD.

Indexed as

Polymorphism, Single Nucleotide5' Flanking RegionAlcoholismAntisocial Personality DisorderCase-Control StudiesDNA Mutational AnalysisExonsFinlandGenetic Predisposition to DiseaseHaplotypesHumansLinkage DisequilibriumLod ScoreMalePhenotypeReceptor, trkBReceptor, trkB

Identifiers

PMID17200667
PMCPMC2099305
OpenAlexW1983073923

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.