Evidence map›Paper›PMID 17197416›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2007

Signal transduction pathway of TonB-dependent transporters.

Andrew D Ferguson, Carlos A Amezcua, Najeeb M Halabi, Yogarany Chelliah, Michael K Rosen, Rama Ranganathan, Johann Deisenhofer

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 102 citations in OpenAlex.

  1. Article
  2. Biochemical and functional characterization ofFrontiers in microbiology · 2026
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  6. Chaperone-assisted cryo-EM structure ofbioRxiv : the preprint server for biology · 2024
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  8. Review
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  10. Protein dynamics: The future is bright and complicated!Structural dynamics (Melville, N.Y.) · 2023
    Article
  11. Article
  12. Article
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  14. Article
  15. Article
  16. Article
  17. Article
  18. Bacteria-Killing Type IV Secretion Systems.Frontiers in microbiology · 2019
    Review
  19. Chalkophores.Annual review of biochemistry · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Andrew D FergusonDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Carlos A Amezcua
Najeeb M Halabi
Yogarany Chelliah
Michael K Rosen
Rama Ranganathan
Johann Deisenhofer
The University of Texas Southwestern Medical Center · USHoward Hughes Medical Institute · USSouthwestern Medical Center

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transcription of the ferric citrate import system is regulated by ferric citrate binding to the outer membrane transporter FecA. A signal indicating transporter occupancy is relayed across the outer membrane to energy-transducing and regulatory proteins embedded in the cytoplasmic membrane. Because transcriptional activation is not coupled to ferric citrate import, an allosteric mechanism underlies this complex signaling mechanism. Using evolution-based statistical analysis we have identified a sparse but structurally connected network of residues that links distant functional sites in FecA. Functional analyses of these positions confirm their involvement in the mechanism that regulates transcriptional activation in response to ferric citrate binding at the cell surface. This mechanism appears to be conserved and provides the structural basis for the allosteric signaling of TonB-dependent transporters.

Indexed as

Bacterial ProteinsBiological Transport, ActiveBiophysical PhenomenaBiophysicsEscherichia coliEscherichia coli ProteinsMembrane ProteinsModels, MolecularMutagenesis, Site-DirectedNuclear Magnetic Resonance, BiomolecularProtein ConformationProtein Structure, TertiaryPseudomonas putidaReceptors, Cell SurfaceRecombinant ProteinsSignal TransductionBacterial ProteinsEscherichia coli ProteinsFecA protein, E coliMembrane Proteinspseudobactin receptor, PseudomonasReceptors, Cell SurfaceRecombinant ProteinstonB protein, Bacteria

Identifiers

PMID17197416
PMCPMC1760641
OpenAlexW1980274652

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.