Evidence map›Paper›PMID 17192411›Full record

ArticleMolecular biology of the cell2007

Two mammalian Sec16 homologues have nonredundant functions in endoplasmic reticulum (ER) export and transitional ER organization.

Dibyendu Bhattacharyya, Benjamin S Glick

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed, 1 synthesis or guideline pooled it, 154 citations in OpenAlex.

  1. Pooled it
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  12. The Golgi Apparatus: A Key Player in Innate Immunity.International journal of molecular sciences · 2024
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36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Dibyendu BhattacharyyaDepartment of Molecular Genetics and Cell Biology, Institute for Biophysical Dynamics, The University of Chicago, Chicago, IL 60637, USA.
Benjamin S Glick
University of Chicago · US

Funding

THE TRANSITIONAL ER-GOLGI SYSTEM IN BUDDING YEASTSR01GM061156 · NIGMS · UNIVERSITY OF CHICAGO · PI GLICK, BENJAMIN S · 2000 to 2012
$3.6M
NIGMS NIH HHS GM-61156NIGMS NIH HHS R01 GM061156
6 · The paper itself

Abstract

Budding yeast Sec16 is a large peripheral endoplasmic reticulum (ER) membrane protein that functions in generating COPII transport vesicles and in clustering COPII components at transitional ER (tER) sites. Sec16 interacts with multiple COPII components. Although the COPII assembly pathway is evolutionarily conserved, Sec16 homologues have not been described in higher eukaryotes. Here, we show that mammalian cells contain two distinct Sec16 homologues: a large protein that we term Sec16L and a smaller protein that we term Sec16S. These proteins localize to tER sites, and an N-terminal region of each protein is necessary and sufficient for tER localization. The Sec16L and Sec16S genes are both expressed in every tissue examined, and both proteins are required in HeLa cells for ER export and for normal tER organization. Sec16L resembles yeast Sec16 in having a C-terminal conserved domain that interacts with the COPII coat protein Sec23, but Sec16S lacks such a C-terminal conserved domain. Immunoprecipitation data indicate that Sec16L and Sec16S are each present at multiple copies in a heteromeric complex. We infer that mammalian cells have preserved and extended the function of Sec16.

Indexed as

Sequence Homology, Amino AcidAmino Acid SequenceCOP-Coated VesiclesEndoplasmic ReticulumHeLa CellsHumansMolecular Sequence DataMultiprotein ComplexesProtein Structure, TertiaryProtein TransportRecombinant Fusion ProteinsRNA InterferenceVesicular Transport ProteinsMultiprotein ComplexesRecombinant Fusion ProteinsSEC16A protein, humanVesicular Transport Proteins

Identifiers

PMID17192411
PMCPMC1805085
OpenAlexW2129913763

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.