Evidence map›Paper›PMID 17186464›Full record

ArticleAmerican journal of human genetics2006

Premature truncation of a novel protein, RD3, exhibiting subnuclear localization is associated with retinal degeneration.

James S Friedman, Bo Chang, Chitra Kannabiran, Christina Chakarova, Hardeep P Singh, Subhadra Jalali, Norman L Hawes, Kari Branham, Mohammad Othman, Elena Filippova and 7 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 120 citations in OpenAlex.

  1. Article
  2. Article
  3. cGMP Signaling in Photoreceptor Degeneration.International journal of molecular sciences · 2023
    Review
  4. Kinase Inhibitors in Genetic Diseases.International journal of molecular sciences · 2023
    Review
  5. Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. The Journal of biological chemistry · 2020
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

17 authors at 7 institutions in 5 countries.

James S FriedmanDepartment of Ophthalmology, W. K. Kellogg Eye Center, University of Michigan, Ann Arbor, MI 48105, USA.
Bo Chang
Chitra Kannabiran
Christina Chakarova
Hardeep P Singh
Subhadra Jalali
Norman L Hawes
Kari Branham
Mohammad Othman
Elena Filippova
Debra A Thompson
Andrew R Webster
Sten Andréasson
Samuel G Jacobson
Shomi S Bhattacharya
John R Heckenlively
Anand Swaroop
University of Michigan–Ann Arbor · USL V Prasad Eye Institute · INJackson Laboratory · USUniversity College London · GBInstitute of Ophthalmology · MXLund University · SEPenn Presbyterian Medical Center · US

Funding

VIVARIUM MODULEP30EY007003 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI David Antonetti · 1987 to 2026
$17.6M
MOLECULAR MECHANISMS OF RETINA-SPECIFIC GENE EXPRESSIONR01EY011115 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HITCHCOCK, PETER F · 1997 to 2008
$4.1M
Mouse Models of Human Hereditary Eye DiseasesR01EY007758 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HECKENLIVELY, JOHN R · 1988 to 2007
$3.4M
E75 IN THE DEVELOPING DROSOPHILA EYEF31EY007003 · NEI · YALE UNIVERSITY · PI SHILTON, ALYCIA N · 1999 to 2001
$14k
NEI NIH HHS EY007003NEI NIH HHS EY007758NEI NIH HHS EY011115NEI NIH HHS F31 EY007003NEI NIH HHS P30 EY007003NEI NIH HHS R01 EY007758NEI NIH HHS R01 EY011115
6 · The paper itself

Abstract

The rd3 mouse is one of the oldest identified models of early-onset retinal degeneration. Using the positional candidate approach, we have identified a C-->T substitution in a novel gene, Rd3, that encodes an evolutionarily conserved protein of 195 amino acids. The rd3 mutation results in a predicted stop codon after residue 106. This change is observed in four rd3 lines derived from the original collected mice but not in the nine wild-type mouse strains that were examined. Rd3 is preferentially expressed in the retina and exhibits increasing expression through early postnatal development. In transiently transfected COS-1 cells, the RD3-fusion protein shows subnuclear localization adjacent to promyelocytic leukemia-gene-product bodies. The truncated mutant RD3 protein is detectable in COS-1 cells but appears to get degraded rapidly. To explore potential association of the human RD3 gene at chromosome 1q32 with retinopathies, we performed a mutation screen of 881 probands from North America, India, and Europe. In addition to several alterations of uncertain significance, we identified a homozygous alteration in the invariant G nucleotide of the RD3 exon 2 donor splice site in two siblings with Leber congenital amaurosis. This mutation is predicted to result in premature truncation of the RD3 protein, segregates with the disease, and is not detected in 121 ethnically matched control individuals. We suggest that the retinopathy-associated RD3 protein is part of subnuclear protein complexes involved in diverse processes, such as transcription and splicing.

Indexed as

Amino Acid SequenceAnimalsCase-Control StudiesCell Nucleus StructuresChlorocebus aethiopsCOS CellsDisease Models, AnimalEuropeGene Expression Regulation, DevelopmentalHumansIndiaMiceMice, Mutant StrainsMolecular Sequence DataMutationNorth AmericaNuclear Proteinsretinal degeneration 3 protein, mouse

Identifiers

PMID17186464
PMCPMC1698706
OpenAlexW2082242442

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.