Evidence map›Paper›PMID 17183675›Full record

ArticlePloS one2006

Fine tuning of globin gene expression by DNA methylation.

Alon Goren, Giora Simchen, Eitan Fibach, Piroska E Szabo, Keiji Tanimoto, Lyubomira Chakalova, Gerd P Pfeifer, Peter J Fraser, James D Engel, Howard Cedar

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 50 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Article
  4. Article
  5. Review
  6. Article
  7. Exploring epigenetic and microRNA approaches for γ-globin gene regulation.Experimental biology and medicine (Maywood, N.J.) · 2021
    Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Role of transcription complexes in the formation of the basal methylation pattern in early development.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  13. Article
  14. Review
  15. Article
  16. Maintenance of Epigenetic Information.Cold Spring Harbor perspectives in biology · 2016
    Review
  17. Epigenetic regulation of fetal globin gene expression in adult erythroid cells.Translational research : the journal of laboratory and clinical medicine · 2015
    Review
  18. Article
  19. DNA methylation dynamics in health and disease.Nature structural & molecular biology · 2013
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 4 countries.

Alon GorenDepartment of Cellular Biochemistry and Human Genetics, Hebrew University, Jerusalem, Israel.
Giora Simchen
Eitan Fibach
Piroska E Szabo
Keiji Tanimoto
Lyubomira Chakalova
Gerd P Pfeifer
Peter J Fraser
James D Engel
Howard Cedar
Hebrew University of Jerusalem · ILBabraham Institute · GBBeckman Research InstituteCity Of Hope National Medical Center · USUniversity of Michigan–Ann Arbor · USUniversity of Tsukuba · JP

Funding

Medical Research Council G117/530
6 · The paper itself

Abstract

Expression patterns in the globin gene cluster are subject to developmental regulation in vivo. While the gamma(A) and gamma(G) genes are expressed in fetal liver, both are silenced in adult erythrocytes. In order to decipher the role of DNA methylation in this process, we generated a YAC transgenic mouse system that allowed us to control gamma(A) methylation during development. DNA methylation causes a 20-fold repression of gamma(A) both in non-erythroid and adult erythroid cells. In erythroid cells this modification works as a dominant mechanism to repress gamma gene expression, probably through changes in histone acetylation that prevent the binding of erythroid transcription factors to the promoter. These studies demonstrate that DNA methylation serves as an elegant in vivo fine-tuning device for selecting appropriate genes in the globin locus. In addition, our findings provide a mechanism for understanding the high levels of gamma-globin transcription seen in patients with Hereditary Persistence of Fetal Hemoglobin, and help explain why 5azaC and butyrate compounds stimulate gamma-globin expression in patients with beta-hemoglobinopathies.

Indexed as

DNA MethylationAcetylationAnimalsBase Sequencebeta-ThalassemiaChromosomes, Artificial, YeastDNA PrimersErythroblastsFetal Hemoglobingamma-GlobinsGene ExpressionHistonesHumansMiceMice, TransgenicPromoter Regions, GeneticDNA PrimersFetal Hemoglobingamma-GlobinsHistones

Identifiers

PMID17183675
PMCPMC1762317
OpenAlexW2084066387

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.