Evidence map›Paper›PMID 17183673›Full record

ArticlePloS one2006

A new family of giardial cysteine-rich non-VSP protein genes and a novel cyst protein.

Barbara J Davids, David S Reiner, Shanda R Birkeland, Sarah P Preheim, Michael J Cipriano, Andrew G McArthur, Frances D Gillin

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 92 citations in OpenAlex.

  1. Parasitology · 2026
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  7. Giardia duodenalis Virulence - "To Be, or Not To Be".Current tropical medicine reports · 2021
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  8. The compact genome ofMicrobial genomics · 2020
    Article
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  13. Transcriptomic Profiling of High-DensityFrontiers in cellular and infection microbiology · 2017
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
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  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Barbara J DavidsDepartment of Pathology, Division of Infectious Diseases, University of California, San Diego, California, United States of America. Bdavids@ucsd.edu
David S Reiner
Shanda R Birkeland
Sarah P Preheim
Michael J Cipriano
Andrew G McArthur
Frances D Gillin
Marine Biological Laboratory · USUniversity of California, San Diego · USWoods Hole Oceanographic Institution · US

Funding

TL MOLECULES AND GAMMA-DELTA T CELLSP01DK035108 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KAGNOFF, MARTIN FREDERICK · 1986 to 2013
$19.2M
GIARDIA--A MODEL FOR ANCIENT EUKARYOTE GENOME FUNCTIONSR01AI042488 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GILLIN, FRANCES D. · 1998 to 2010
$2.4M
Mechanisms of Giardia Iamblia ExcystationR01AI051687 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GILLIN, FRANCES D. · 2003 to 2007
$1.7M
Mechanisms of Giardia Lamblia Cyst Wall FormationR01GM061896 · NIGMS · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI GILLIN, FRANCES D. · 2001 to 2004
$1.4M
Characterization of the Giardia lamblia TranscriptomeR01AI051089 · NIAID · MARINE BIOLOGICAL LABORATORY · PI MCARTHUR, ANDREW G · 2001 to 2004
$942k
NIAID NIH HHS AI42488NIAID NIH HHS AI51089NIAID NIH HHS AI51687NIAID NIH HHS R01 AI042488NIAID NIH HHS R01 AI051089NIAID NIH HHS R01 AI051687NIDDK NIH HHS DK35108NIDDK NIH HHS P01 DK035108NIGMS NIH HHS GM61896NIGMS NIH HHS R01 GM061896
6 · The paper itself

Abstract

Since the Giardia lamblia cyst wall is necessary for survival in the environment and host infection, we tested the hypothesis that it contains proteins other than the three known cyst wall proteins. Serial analysis of gene expression during growth and encystation revealed a gene, "HCNCp" (High Cysteine Non-variant Cyst protein), that was upregulated late in encystation, and that resembled the classic Giardia variable surface proteins (VSPs) that cover the trophozoite plasmalemma. HCNCp is 13.9% cysteine, with many "CxxC" tetrapeptide motifs and a transmembrane sequence near the C-terminus. However, HCNCp has multiple "CxC" motifs rarely found in VSPs, and does not localize to the trophozoite plasmalemma. Moreover, the HCNCp C-terminus differed from the canonical VSP signature. Full-length epitope-tagged HCNCp expressed under its own promoter was upregulated during encystation with highest expression in cysts, including 42 and 21 kDa C-terminal fragments. Tagged HCNCp targeted to the nuclear envelope in trophozoites, and co-localized with cyst proteins to encystation-specific secretory vesicles during encystation. HCNCp defined a novel trafficking pathway as it localized to the wall and body of cysts, while the cyst proteins were exclusively in the wall. Unlike VSPs, HCNCp is expressed in at least five giardial strains and four WB subclones expressing different VSPs. Bioinformatics identified 60 additional large high cysteine membrane proteins (HCMp) containing > or = 20 CxxC/CxC's lacking the VSP-specific C-terminal CRGKA. HCMp were absent or rare in other model or parasite genomes, except for Tetrahymena thermophila with 30. MEME analysis classified the 61 gHCMp genes into nine groups with similar internal motifs. Our data suggest that HCNCp is a novel invariant cyst protein belonging to a new HCMp family that is abundant in the Giardia genome. HCNCp and the other HCMp provide a rich source for developing parasite-specific diagnostic reagents, vaccine candidates, and subjects for further research into Giardia biology.

Indexed as

Genes, ProtozoanAmino Acid SequenceAnimalsBase SequenceComputational BiologyCysteineDNA PrimersGenetic VariationGiardia lambliaGiardiasisHost-Pathogen InteractionsHumansMolecular Sequence DataProtozoan ProteinsRNA, MessengerRNA, ProtozoanCysteineDNA PrimersProtozoan ProteinsRNA, MessengerRNA, Protozoan

Identifiers

PMID17183673
PMCPMC1762436
OpenAlexW2072861322

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.