Evidence map›Paper›PMID 17183366›Full record

ArticleThe EMBO journal2007

A nucleo-cytoplasmic SR protein functions in viral IRES-mediated translation initiation.

Kristin M Bedard, Sarah Daijogo, Bert L Semler

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 118 papers.

0numbers the graph read from it
0cells of the map it votes in
118citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

118 citing papers in PubMed, 170 citations in OpenAlex.

  1. A B1 SINE element within the mouseScience advances · 2026
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  12. Oncogenic SRSF3 in health and diseases.International journal of biological sciences · 2023
    Review
  13. Review
  14. Article
  15. Review
  16. Exploring the multifunctionality of SR proteins.Biochemical Society transactions · 2022
    Article
  17. Review
  18. Review
  19. Article
  20. Article

58 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kristin M BedardDepartment of Microbiology and Molecular Genetics, School of Medicine, University of California, Irvine, CA 92694, USA.
Sarah Daijogo
Bert L Semler
University of California, Irvine · US

Funding

Impact of host protein dynamics on picornavirus RNA 5’ noncoding region functionsR01AI026765 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI SEMLER, BERT L · 1988 to 2019
$5.9M
Virus-host interactions: a multi-scale training programT32AI007319 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI SEMLER, BERT L, SHI, YONGSHENG · 1988 to 2024
$2.4M
Functions of 5' NCRs of picornavirus and cellular mRNAsR56AI026765 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI SEMLER, BERT L · 2008 to 2008
$369k
NIAID NIH HHS AI 07319NIAID NIH HHS AI 26765NIAID NIH HHS R01 AI026765NIAID NIH HHS R56 AI026765NIAID NIH HHS T32 AI007319
6 · The paper itself

Abstract

A significant number of viral and cellular mRNAs utilize cap-independent translation, employing mechanisms distinct from those of canonical translation initiation. Cap-independent translation requires noncanonical, cellular RNA-binding proteins; however, the roles of such proteins in ribosome recruitment and translation initiation are not fully understood. This work demonstrates that a nucleo-cytoplasmic SR protein, SRp20, functions in internal ribosome entry site (IRES)-mediated translation of a viral RNA. We found that SRp20 interacts with the cellular RNA-binding protein, PCBP2, a protein that binds to IRES sequences within the genomic RNAs of certain picornaviruses and is required for viral translation. We utilized in vitro translation in HeLa cell extracts depleted of SRp20 to demonstrate that SRp20 is required for poliovirus translation initiation. Targeting SRp20 in HeLa cells with short interfering RNAs resulted in inhibition of SRp20 protein expression and a corresponding decrease in poliovirus translation. Our data have identified a previously unknown function of an SR protein (i.e., the stimulation of IRES-mediated translation), further documenting the multifunctional nature of this important class of cellular RNA-binding proteins.

Indexed as

Protein BiosynthesisAnimalsCell ExtractsCells, CulturedHeLa CellsHumansPoliovirusProtein BindingRNA-Binding ProteinsRNA, Small InterferingSerine-Arginine Splicing FactorsSpodopteraViral ProteinsCell ExtractsPCBP2 protein, humanRNA-Binding ProteinsRNA, Small InterferingSerine-Arginine Splicing FactorsSRSF3 protein, humanViral Proteins

Identifiers

PMID17183366
PMCPMC1783453
OpenAlexW2070510657

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.