ArticlePlant molecular biology2007
A large-scale collection of phenotypic data describing an insertional mutant population to facilitate functional analysis of rice genes.
Article in Plant molecular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.
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Who cites it
49 citing papers in PubMed.
- Divergent genetic architecture of cold stress tolerance inFrontiers in plant science · 2025Article
- Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regeneration.Genome biology · 2022Article
- SDG712, a Putative H3K9-Specific Methyltransferase Encoding Gene, Delays Flowering through Repressing the Expression of Florigen Genes in Rice.Rice (New York, N.Y.) · 2021Article
- Plant phenomics: High-throughput technology for accelerating genomics.Journal of biosciences · 2020Review
- Transcription of soybean retrotransposon SORE-1 is temporally upregulated in developing ovules.Planta · 2018Article
- A collection of enhancer trap insertional mutants for functional genomics in tomato.Plant biotechnology journal · 2017Article
- Developmental Restriction of Retrotransposition Activated inGenetics · 2017Article
- Large-scale phenomics analysis of a T-DNA tagged mutant population.GigaScience · 2017Article
- Ascribing Functions to Genes: Journey Towards Genetic Improvement of Rice Via Functional Genomics.Current genomics · 2016Article
- Gene Overexpression Resources in Cereals for Functional Genomics and Discovery of Useful Genes.Frontiers in plant science · 2016Review
- OryzaGenome: Genome Diversity Database of Wild Oryza Species.Plant & cell physiology · 2016Article
- Characterization of a potato activation-tagged mutant, nikku, and its partial revertant.Planta · 2015Article
- Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice.Genome biology · 2014Article
- Tos17 rice element: incomplete but effective.Mobile DNA · 2014Article
- Transposon Insertion Finder (TIF): a novel program for detection of de novo transpositions of transposable elements.BMC bioinformatics · 2014Article
- Phenotype to genotype using forward-genetic Mu-seq for identification and functional classification of maize mutants.Frontiers in plant science · 2014Article
- OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endosperm.Journal of experimental botany · 2013Article
- Growth platform-dependent and -independent phenotypic and metabolic responses of Arabidopsis and its halophytic relative, Eutrema salsugineum, to salt stress.Plant physiology · 2013Article
- Frontiers of torenia research: innovative ornamental traits and study of ecological interaction networks through genetic engineering.Plant methods · 2013Article
- RiceSRTFDB: a database of rice transcription factors containing comprehensive expression, cis-regulatory element and mutant information to facilitate gene function analysis.Database : the journal of biological databases and curation · 2013Article
Corrections and comments
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In order to facilitate the functional analysis of rice genes, we produced about 50,000 insertion lines with the endogenous retrotransposon Tos17. Phenotypes of these lines in the M2 generation were observed in the field and characterized based on 53 phenotype descriptors. Nearly half of the lines showed more than one mutant phenotype. The most frequently observed phenotype was low fertility, followed by dwarfism. Phenotype data with photographs of each line are stored in the Tos17 mutant panel web-based database with a dataset of sequences flanking Tos17 insertion points in the rice genome (http://tos.nias.affrc.go.jp/). This combination of phenotypic and flanking sequence data will stimulate the functional analysis of rice genes.
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