Evidence map›Paper›PMID 17180623›Full record

ArticleImmunogenetics2007

High rate of mutation reporter gene inactivation during human T cell proliferation.

Aida Gabdoulkhakova, Gunnel Henriksson, Nadezhda Avkhacheva, Alexander Sofin, Anders Bredberg

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Immunogenetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Changes in chromosome organization during PHA-activation of resting human lymphocytes measured by cryo-FISH.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Aida GabdoulkhakovaDepartment of Laboratory Medicine, Section of Medical Microbiology, Lund University, Malmo University Hospital, S-205 02, Malmo, Sweden.
Gunnel Henriksson
Nadezhda Avkhacheva
Alexander Sofin
Anders Bredberg
Lund University · SEInstitute of Cell Biophysics · RUMalmö University · SERussian Academy of Sciences · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Caspase activation and degradation of deoxyribonucleic acid (DNA) damage response factors occur during in vitro T-cell proliferation, and an increased frequency of hypoxanthine-guanine phosphoribosyltransferase (HPRT)-negative variants have been reported in conditions associated with in vivo T-cell proliferation. We have applied two human somatic cell mutation reporter assays, for the HPRT and phosphatidylinositol glycan class A (PIG-A) genes, to human T cells activated in vitro with anti-CD3 and anti-CD28. We demonstrate proliferation throughout 6 weeks of cultivation, and find that the frequency of variant cells phenotypically negative for HPRT and PIG-A, respectively, increases from 10(-5) up to 10(-3) -10(-2). We also report preliminary evidence for low-density CpG methylation in the HPRT promoter suggesting that epigenetic modification may contribute to this markedly heightened rate of gene inactivation.

Indexed as

Base SequenceCaspase 3Cell ProliferationCpG IslandsDNA DamageDNA PrimersGenes, ReporterHumansHypoxanthine PhosphoribosyltransferaseImmunogeneticsIn Vitro TechniquesLymphocyte ActivationMembrane ProteinsMutationT-LymphocytesCaspase 3DNA PrimersHypoxanthine PhosphoribosyltransferaseMembrane Proteinsphosphatidylinositol glycan-class A protein

Identifiers

PMID17180623
OpenAlexW2068295645

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.