ArticleMolecular genetics and genomics : MGG2007
The family of DOF transcription factors: from green unicellular algae to vascular plants.
Article in Molecular genetics and genomics : MGG, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
74 citing papers in PubMed, 224 citations in OpenAlex.
- Progress and new questions in understanding the mechanisms controlling plant nitrogen responses.Plant biotechnology (Tokyo, Japan) · 2026Article
- Comprehensive analysis of DOF transcription factors and characterization of PlOBP4 during herbaceous peony bud dormancy.Plant cell reports · 2026Article
- DOF gene family in P. sativum (L.): comprehensive genomic identification, phylogenetic examination, evolutionary growth, and expression analysis.BMC genomics · 2025Article
- ZmDof08, a zinc finger transcription factor, plays critical roles in photosynthesis in maize.Plant cell reports · 2025Article
- Identification and expression profiling of theFrontiers in plant science · 2025Article
- Genome-wide identification of DNA-binding with one finger transcription factor genes in Chinese chestnut and their response to abiotic stress.Frontiers in plant science · 2025Article
- Identification and Characterization of theInternational journal of molecular sciences · 2024Article
- Genome-Based Identification of the Dof Gene Family in ThreeInternational journal of molecular sciences · 2024Article
- Genome-wide identification and molecular evolution of Dof transcription factors in Cyperus esculentus.BMC genomics · 2024Article
- DOF gene family expansion and diversification.Genetics and molecular biology · 2024Article
- Article
- Genome-Wide Identification and Expression Analysis of thePlants (Basel, Switzerland) · 2023Article
- Identification of Photoperiod- and Phytohormone-Responsive DNA-Binding One Zinc Finger (Dof) Transcription Factors inInternational journal of molecular sciences · 2023Article
- DOF transcription factors: Specific regulators of plant biological processes.Frontiers in plant science · 2023Review
- Genome-wide identification and functional analysis of Dof transcription factor family in Camelina sativa.BMC genomics · 2022Article
- Genome-Wide Identification and Analysis ofGenes · 2022Article
- Genome-Wide Identification and Expression Analysis of Dof Transcription Factors in Lotus (Plants (Basel, Switzerland) · 2022Article
- Underlying Biochemical and Molecular Mechanisms for Seed Germination.International journal of molecular sciences · 2022Review
- Article
- Comparative and evolutionary analysis of Arabidopsis RIN4-like/NOI proteins induced by herbivory.PloS one · 2022Article
14 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
This article deals with the origin and evolution of the DOF transcription factor family through a phylogenetic analysis of those DOF sequences identified from a variety of representative organisms from different taxonomic groups: the green unicellular alga Chlamydomonas reinhardtii, the moss Physcomitrella patens, the fern Selaginella moellendorffii, the gymnosperm Pinus taeda, the dicotyledoneous Arabidopsis thaliana and the monocotyledoneous angiosperms Oryza sativa and Hordeum vulgare. In barley, we have identified 26 different DOF genes by sequence analyses of clones isolated from the screening of genomic libraries and of ESTs, whereas a single DOF gene was identified by bioinformatics searches in the Chlamydomonas genome. The phylogenetic analysis groups all these genes into six major clusters of orthologs originated from a primary basal grade. Our results suggest that duplications of an ancestral DOF, probably formed in the photosynthetic eukaryotic ancestor, followed by subsequent neo-, sub-functionalization and pseudogenization processes would have triggered the expansion of the DOF family. Loss, acquisition and shuffling of conserved motifs among the new DOFs likely underlie the mechanism of formation of the distinct subfamilies.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.