Evidence map›Paper›PMID 17179094›Full record

ArticleGenetics2007

Exploring strategies for protein trapping in Drosophila.

Ana T Quiñones-Coello, Lisa N Petrella, Kathleen Ayers, Anthony Melillo, Stacy Mazzalupo, Andrew M Hudson, Shu Wang, Claudia Castiblanco, Michael Buszczak, Roger A Hoskins and 1 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 103 papers.

0numbers the graph read from it
0cells of the map it votes in
103citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

103 citing papers in PubMed, 165 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Evidence that tissue recoil in the earlyMolecular biology of the cell · 2023
    Article
  8. Article
  9. Article
  10. Tagging Drosophila Proteins with Genetically Encoded Fluorophores.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  11. Frontiers in oncology · 2022
    Review
  12. Review
  13. Drosophila SERTAD domain protein Taranis is required in somatic cells for maintenance of male germline stem cells.Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Article
  14. GFP-Tagged Protein Detection by Electron Microscopy Using a GBP-APEX Tool inFrontiers in cell and developmental biology · 2021
    Article
  15. Article
  16. Development (Cambridge, England) · 2020
    Article
  17. Article
  18. Review
  19. Article
  20. Article

43 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Ana T Quiñones-CoelloDepartment of Genetics, Cellular and Developmental Biology, Yale University School of Medicine, New Haven, Connecticut 06520, USA.
Lisa N Petrella
Kathleen Ayers
Anthony Melillo
Stacy Mazzalupo
Andrew M Hudson
Shu Wang
Claudia Castiblanco
Michael Buszczak
Roger A Hoskins
Lynn Cooley
Department of Embryology · USLawrence Berkeley National Laboratory · USYale University · US

Funding

Transposon induced disruption of most Drosophila genesR01GM067858 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI BELLEN, HUGO J · 2003 to 2020
$15.7M
OOCYTE DEVELOPMENT IN DROSOPHILAR01GM043301 · NIGMS · YALE UNIVERSITY · PI COOLEY, LYNN · 1990 to 2020
$10.7M
COPAS SELECT DROSOPHILA EMBRYO AND LARVA SORTERS10RR016749 · NCRR · YALE UNIVERSITY · PI COOLEY, LYNN · 2002 to 2002
$140k
NCRR NIH HHS RR16749NIGMS NIH HHS GM043301NIGMS NIH HHS GM067858NIGMS NIH HHS R01 GM043301NIGMS NIH HHS R01 GM067858
6 · The paper itself

Abstract

The use of fluorescent protein tags has had a huge impact on cell biological studies in virtually every experimental system. Incorporation of coding sequence for fluorescent proteins such as green fluorescent protein (GFP) into genes at their endogenous chromosomal position is especially useful for generating GFP-fusion proteins that provide accurate cellular and subcellular expression data. We tested modifications of a transposon-based protein trap screening procedure in Drosophila to optimize the rate of recovering useful protein traps and their analysis. Transposons carrying the GFP-coding sequence flanked by splice acceptor and donor sequences were mobilized, and new insertions that resulted in production of GFP were captured using an automated embryo sorter. Individual stocks were established, GFP expression was analyzed during oogenesis, and insertion sites were determined by sequencing genomic DNA flanking the insertions. The resulting collection includes lines with protein traps in which GFP was spliced into mRNAs and embedded within endogenous proteins or enhancer traps in which GFP expression depended on splicing into transposon-derived RNA. We report a total of 335 genes associated with protein or enhancer traps and a web-accessible database for viewing molecular information and expression data for these genes.

Indexed as

AnimalsBlotting, WesternCrosses, GeneticDatabases, GeneticDNA PrimersDNA Transposable ElementsDrosophila melanogasterDrosophila ProteinsGreen Fluorescent ProteinsMutagenesis, InsertionalPolymerase Chain ReactionRecombinant Fusion ProteinsSequence Analysis, DNADNA PrimersDNA Transposable ElementsDrosophila Proteinsenhanced green fluorescent proteinGreen Fluorescent ProteinsRecombinant Fusion Proteins

Identifiers

PMID17179094
PMCPMC1840052
OpenAlexW2150179407

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.