Evidence map›Paper›PMID 17179079›Full record

ArticleGenetics2007

A microsatellite linkage map of Barramundi, Lates calcarifer.

Chun Ming Wang, Ze Yuan Zhu, Loong Chueng Lo, Felicia Feng, Grace Lin, Wen Tong Yang, Jian Li, Gen Hua Yue

Abstract read
In one paragraph

Article in Genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

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  18. A simple sequence repeat- and single-nucleotide polymorphism-based genetic linkage map of the brown planthopper, Nilaparvata lugens.DNA research : an international journal for rapid publication of reports on genes and genomes · 2013
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Chun Ming WangMolecular Population Genetics Group, Temasek Life Sciences Laboratory, National University of Singapore, 117604 Singapore, Republic of Singapore.
Ze Yuan Zhu
Loong Chueng Lo
Felicia Feng
Grace Lin
Wen Tong Yang
Jian Li
Gen Hua Yue

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Barramundi (Lates calcarifer) is an important farmed marine food fish species. Its compact genome (approximately 700 Mb) is among the smallest genomes of food fish species. We established a first-generation genetic linkage map of Barramundi with a mapping panel containing three parents (two males and one female) and 93 progeny. A total of 240 microsatellite markers were mapped into 24 linkage groups. Among these markers, 10 were located in ESTs and known genes. The total lengths of the female and male maps were 873.8 and 414.5 cM with an average marker spacing of 6.20 and 4.70 cM, respectively. Comparing the flanking sequences of the 240 Barramundi microsatellites with the assembled whole-genome sequences of Tetraodon nigrovidiris revealed 55 homologous sequences located in 19 of the 21 chromosomes of T. nigrovidiris. The map will not only enable the mapping of quantitative trait loci, but also provide new resources for understanding the evolution of fish genomes.

Indexed as

Chromosome MappingAnimalsChromosomesEnvironmentFemaleFishesGenetic LinkageMaleMicrosatellite RepeatsModels, GeneticMolecular Sequence DataQuantitative Trait, HeritableRecombination, GeneticSex Characteristics

Identifiers

PMID17179079
PMCPMC1800599

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.