Evidence map›Paper›PMID 17178832›Full record

ArticleMolecular and cellular biology2007

Dimerization of protein tyrosine phosphatase sigma governs both ligand binding and isoform specificity.

Simon Lee, Clare Faux, Jennifer Nixon, Daniel Alete, John Chilton, Muhamed Hawadle, Andrew W Stoker

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Structure-Based Engineering for PTPσ-Targeted Therapeutic Development.International journal of molecular sciences · 2026
    Review
  2. Article
  3. Article
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  6. Article
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  11. Protein tyrosine phosphatase σ targets apical junction complex proteins in the intestine and regulates epithelial permeability.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. PTPBR7 binding proteins in myelinating neurons of the mouse brain.International journal of biological sciences · 2011
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Simon LeeNeural Development Unit, UCL Institute of Child Health, 30 Guilford Street, London WC1N 1EH, United Kingdom.
Clare Faux
Jennifer Nixon
Daniel Alete
John Chilton
Muhamed Hawadle
Andrew W Stoker

Funding

Wellcome Trust 071418
6 · The paper itself

Abstract

Signaling through receptor protein tyrosine phosphatases (RPTPs) can influence diverse processes, including axon development, lymphocyte activation, and cell motility. The molecular regulation of these enzymes, however, is still poorly understood. In particular, it is not known if, or how, the dimerization state of RPTPs is related to the binding of extracellular ligands. Protein tyrosine phosphatase sigma (PTPsigma) is an RPTP with major isoforms that differ in their complements of fibronectin type III domains and in their ligand-binding specificities. In this study, we show that PTPsigma forms homodimers in the cell, interacting at least in part through the transmembrane region. Using this knowledge, we provide the first evidence that PTPsigma ectodomains must be presented as dimers in order to bind heterophilic ligands. We also provide evidence of how alternative use of fibronectin type III domain complements in two major isoforms of PTPsigma can alter the ligand binding specificities of PTPsigma ectodomains. The data suggest that the alternative domains function largely to change the rotational conformations of the amino-terminal ligand binding sites of the ectodomain dimers, thus imparting novel ligand binding properties. These findings have important implications for our understanding of how heterophilic ligands interact with, and potentially regulate, RPTPs.

Indexed as

Amino Acid SequenceAnimalsAvian ProteinsCell LineChick EmbryoChickensCysteineDimerizationGene DeletionHumansLigandsMolecular Sequence DataMutagenesis, Site-DirectedProtein BindingProtein IsoformsProtein Structure, TertiaryAvian ProteinsCysteineLigandsProtein IsoformsProtein Tyrosine PhosphatasesRecombinant Fusion Proteins

Identifiers

PMID17178832
PMCPMC1820468

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.