Evidence map›Paper›PMID 17172359›Full record

ArticleThe Plant cell2006

The cauliflower Or gene encodes a DnaJ cysteine-rich domain-containing protein that mediates high levels of beta-carotene accumulation.

Shan Lu, Joyce Van Eck, Xiangjun Zhou, Alex B Lopez, Diana M O'Halloran, Kelly M Cosman, Brian J Conlin, Dominick J Paolillo, David F Garvin, Julia Vrebalov and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 203 papers.

0numbers the graph read from it
0cells of the map it votes in
203citing papers in PubMed
8.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

203 citing papers in PubMed, 541 citations in OpenAlex.

  1. Review
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143 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Shan LuU.S. Department of Agriculure-Agricultural Research Service, Plant, Soil, and Nutrition Laboratory, Cornell University, Ithaca, New York 14853, USA.
Joyce Van Eck
Xiangjun Zhou
Alex B Lopez
Diana M O'Halloran
Kelly M Cosman
Brian J Conlin
Dominick J Paolillo
David F Garvin
Julia Vrebalov
Leon V Kochian
Hendrik Küpper
Elizabeth D Earle
Jun Cao
Li Li
Cornell University · USAgricultural Research Service · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite recent progress in our understanding of carotenogenesis in plants, the mechanisms that govern overall carotenoid accumulation remain largely unknown. The Orange (Or) gene mutation in cauliflower (Brassica oleracea var botrytis) confers the accumulation of high levels of beta-carotene in various tissues normally devoid of carotenoids. Using positional cloning, we isolated the gene representing Or and verified it by functional complementation in wild-type cauliflower. Or encodes a plastid-associated protein containing a DnaJ Cys-rich domain. The Or gene mutation is due to the insertion of a long terminal repeat retrotransposon in the Or allele. Or appears to be plant specific and is highly conserved among divergent plant species. Analyses of the gene, the gene product, and the cytological effects of the Or transgene suggest that the functional role of Or is associated with a cellular process that triggers the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Moreover, we demonstrate that Or can be used as a novel genetic tool to induce carotenoid accumulation in a major staple food crop. We show here that controlling the formation of chromoplasts is an important mechanism by which carotenoid accumulation is regulated in plants.

Indexed as

Genes, PlantAllelesAlternative SplicingAmino Acid Sequencebeta CaroteneBrassicaChloroplastsCloning, MolecularConserved SequenceGene Expression ProfilingGene Expression Regulation, PlantGenetic Complementation TestHSP40 Heat-Shock ProteinsMembrane ProteinsMolecular Sequence DataMutationbeta CaroteneHSP40 Heat-Shock ProteinsMembrane ProteinsPftf protein, Capsicum annuumPlant ProteinsRNA, Messenger

Identifiers

PMID17172359
PMCPMC1785402
OpenAlexW2057424655

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.