Evidence map›Paper›PMID 17172329›Full record

ArticleJournal of bacteriology2007

Complete genome sequence of Haemophilus somnus (Histophilus somni) strain 129Pt and comparison to Haemophilus ducreyi 35000HP and Haemophilus influenzae Rd.

Jean F Challacombe, A J Duncan, Thomas S Brettin, David Bruce, Olga Chertkov, J Chris Detter, Cliff S Han, Monica Misra, Paul Richardson, Roxanne Tapia and 3 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of bacteriology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Whole-genome sequencing ofVeterinary world · 2023
    Article
  5. L-lactate in cerebrospinal fluid can be used as a biomarker of encephalitis in cattle.Canadian journal of veterinary research = Revue canadienne de recherche veterinaire · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Single nucleotide polymorphisms in the bovine Histophilus somni genome; a comparison of new and old isolates.Canadian journal of veterinary research = Revue canadienne de recherche veterinaire · 2015
    Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Jean F ChallacombeDepartment of Energy Joint Genome Institute, Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA. jchalla@lanl.gov
A J Duncan
Thomas S Brettin
David Bruce
Olga Chertkov
J Chris Detter
Cliff S Han
Monica Misra
Paul Richardson
Roxanne Tapia
Nina Thayer
Gary Xie
Thomas J Inzana
Joint Genome Institute · USLos Alamos National Laboratory · USVirginia Tech · USVirginia–Maryland College of Veterinary Medicine · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Haemophilus somnus can be either a commensal of bovine mucosal surfaces or an opportunistic pathogen. Pathogenic strains of H. somnus are a significant cause of systemic disease in cattle. We report the genome sequence of H. somnus 129Pt, a nonpathogenic commensal preputial isolate, and the results of a genome-wide comparative analysis of H. somnus 129Pt, Haemophilus influenzae Rd, and Haemophilus ducreyi 35000HP. We found unique genes in H. somnus 129Pt involved in lipooligosaccharide biosynthesis, carbohydrate uptake and metabolism, cation transport, amino acid metabolism, ubiquinone and menaquinone biosynthesis, cell surface adhesion, biosynthesis of cofactors, energy metabolism, and electron transport. There were also many genes in common among the three organisms. Our comparative analyses of H. somnus 129Pt, H. influenzae Rd, and H. ducreyi 35000HP revealed similarities and differences in the numbers and compositions of genes involved in metabolism, host colonization, and persistence. These results lay a foundation for research on the host specificities and niche preferences of these organisms. Future comparisons between H. somnus 129Pt and virulent strains will aid in the development of protective strategies and vaccines to protect cattle against H. somnus disease.

Indexed as

Genome, BacterialAmino AcidsBacterial AdhesionBase SequenceCitric Acid CycleHaemophilus ducreyiHaemophilus influenzaeHaemophilus somnusHemoglobinsMolecular Sequence DataNADNucleotidesPentose Phosphate PathwayTransferrinUbiquinoneAmino AcidsHemoglobinsNADNucleotidesTransferrinUbiquinone

Identifiers

PMID17172329
PMCPMC1855741
OpenAlexW2152719777

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.