Evidence map›Paper›PMID 17166701›Full record

ArticleMechanisms of development2007

Retinoic acid regulation of eye and testis-specific transcripts within a complex locus.

Pragnya Das, Timothy J Doyle, Donglin Liu, Jaspreet Kochar, Kwan Hee Kim, Melissa B Rogers

Open access · greenAbstract read
In one paragraph

Article in Mechanisms of development, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 49% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Retinoids regulate stem cell differentiation.Journal of cellular physiology · 2011
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Pragnya DasDepartment of Biochemistry and Molecular Biology (MSB E627), UMDNJ-New Jersey Medical School, 185 South Orange Avenue, P.O. Box 1709, Newark NJ 07101-1709, USA.
Timothy J Doyle
Donglin Liu
Jaspreet Kochar
Kwan Hee Kim
Melissa B Rogers
Washington State University · US

Funding

RETINOIC ACID REGULATED GENES AND EMBRYOSR01HD031117 · NICHD · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI ROGERS, MELISSA B · 2000 to 2003
$1.2M
RETINOIC ACID: REGULATED GENES AND EARLY EMBRYOSR29HD031117 · NICHD · UNIVERSITY OF SOUTH FLORIDA · PI ROGERS, MELISSA B · 1994 to 1998
–
NICHD NIH HHS R01 HD031117NICHD NIH HHS R29 HD031117
6 · The paper itself

Abstract

We previously used a yeast-based enhancer trap to identify a strong, retinoic acid response element (RARE). We have now characterized testis and eye transcripts that are adjacent to this regulatory element. Bioinformatics analysis of expressed sequence tag (EST) clones and RNase protection, reverse transcription-PCR, and Northern blot assays indicate that these two RNAs are transcribed from the same locus on opposite template strands. This positions the RARE upstream of the testis transcript and downstream of the eye transcript. Additionally, these two RNAs are embedded within the third intron of the 329kbp gene that encodes the Zinc Finger and BTB domain containing 7C protein (Zbtb7C). We present evidence indicating that the testis transcript is expressed primarily in spermatocytes and/or early round spermatids. Furthermore, our analyses of transcript levels in eyes and testes isolated from vitamin A deficient mice or from mice with defects in retinoid storage or signaling indicate that retinoids are required for expression in vivo.

Identifiers

PMID17166701
PMCPMC1847367
OpenAlexW1983270719

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.