Evidence map›Paper›PMID 17160896›Full record

ArticleAmerican journal of human genetics2007

Orofacial cleft risk is increased with maternal smoking and specific detoxification-gene variants.

Min Shi, Kaare Christensen, Clarice R Weinberg, Paul Romitti, Lise Bathum, Anthony Lozada, Richard W Morris, Michael Lovett, Jeffrey C Murray

Open access · bronzeAbstract readHistorical Article
In one paragraph

Article in American journal of human genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed, 2 pooled it
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 2 syntheses or guidelines pooled it, 186 citations in OpenAlex.

  1. Maternal Cigarette Smoking and Cleft Lip and Palate: A Systematic Review and Meta-Analysis.The Cleft palate-craniofacial journal : official publication of the American Cleft Palate-Craniofacial Association · 2022
    Pooled it
  2. Pooled it
  3. Trial
  4. Review
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  10. MicroRNAs and Gene Regulatory Networks Related to Cleft Lip and Palate.International journal of molecular sciences · 2023
    Review
  11. Article
  12. Recent Advances in Nasoalveolar Molding Therapy Using 3D Technology.Craniomaxillofacial trauma & reconstruction · 2022
    Review
  13. Article
  14. Review
  15. Environmental mechanisms of orofacial clefts.Birth defects research · 2020
    Review
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Min ShiDepartment of Biology, University of Iowa, Iowa City, IA, 52242, USA.
Kaare Christensen
Clarice R Weinberg
Paul Romitti
Lise Bathum
Anthony Lozada
Richard W Morris
Michael Lovett
Jeffrey C Murray
University of Iowa · USDuke University · USWashington University in St. Louis · US

Funding

PHENOTYPE AND GENETICS IN OROFACIAL CLEFT FAMILIESP50DE016215 · NIDCR · UNIVERSITY OF IOWA · PI LOVETT, MICHAEL · 2004 to 2008
$10.1M
Molecular Genetic Epidemiology of Cleft Lip and PalateR37DE008559 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 2004 to 2013
$6.8M
GENE-ENVIRONMENT INTERACTION IN FACIAL CLEFTSR01DE011948 · NIDCR · UNIVERSITY OF SOUTHERN DENMARK · PI CHRISTENSEN, KAARE · 1998 to 2006
$1.8M
MOLECULAR GENETIC EPIDEMIOLOGY OF CLEFT LIP AND PALATER01DE008559 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 1988 to 2003
$1.5M
NIEHS STATISTICAL CONSULTING SERVICEZ01ES045005 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI PEDDADA, SHYAMAL · 1997 to 2008
$741k
Intramural NIH HHSNIDCR NIH HHS DE08559NIDCR NIH HHS P50 DE016215NIDCR NIH HHS R01 DE008559NIDCR NIH HHS R01 DE011948NIDCR NIH HHS R01 DE11948NIDCR NIH HHS R37 DE008559PHS HHS U50/CCU 71328
6 · The paper itself

Abstract

Maternal smoking is a recognized risk factor for orofacial clefts. Maternal or fetal pharmacogenetic variants are plausible modulators of this risk. In this work, we studied 5,427 DNA samples, including 1,244 from subjects in Denmark and Iowa with facial clefting and 4,183 from parents, siblings, or unrelated population controls. We examined 25 single-nucleotide polymorphisms in 16 genes in pathways for detoxification of components of cigarette smoke, to look for evidence of gene-environment interactions. For genes identified as related to oral clefting, we studied gene-expression profiles in fetal development in the relevant tissues and time intervals. Maternal smoking was a significant risk factor for clefting and showed dosage effects, in both the Danish and Iowan data. Suggestive effects of variants in the fetal NAT2 and CYP1A1 genes were observed in both the Iowan and the Danish participants. In an expanded case set, NAT2 continued to show significant overtransmission of an allele to the fetus, with a final P value of .00003. There was an interaction between maternal smoking and fetal inheritance of a GSTT1-null deletion, seen in both the Danish (P=.03) and Iowan (P=.002) studies, with a Fisher's combined P value of <.001, which remained significant after correction for multiple comparisons. Gene-expression analysis demonstrated expression of GSTT1 in human embryonic craniofacial tissues during the relevant developmental interval. This study benefited from two large samples, involving independent populations, that provided substantial power and a framework for future studies that could identify a susceptible population for preventive health care.

Indexed as

Arylamine N-AcetyltransferaseCleft LipCleft PalateCytochrome P-450 CYP1A1Embryo, MammalianFemaleGene Expression ProfilingGlutathione TransferaseHistory, 16th CenturyHumansLinkage DisequilibriumMaleMaternal ExposurePolymorphism, Single NucleotidePregnancyRisk FactorsArylamine N-AcetyltransferaseCytochrome P-450 CYP1A1glutathione S-transferase T1Glutathione TransferaseNAT2 protein, human

Identifiers

PMID17160896
PMCPMC1785306
OpenAlexW2048005096

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.