ArticlePlant molecular biology2007
Genome-wide transcriptional analysis of salinity stressed japonica and indica rice genotypes during panicle initiation stage.
Article in Plant molecular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers, 2 of them syntheses that pooled it.
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Who cites it
82 citing papers in PubMed, 2 syntheses or guidelines pooled it.
- Genome-wide lncRNAs identification and association analysis for cold-responsive genes at the booting stage in rice (Oryza sativa L.).The plant genome · 2020Pooled it
- Gene network modules associated with abiotic stress response in tolerant rice genotypes identified by transcriptome meta-analysis.Functional & integrative genomics · 2020Pooled it
- Plant Adaptation to Salinity: Physiological Pathways and Prospects for Crop Improvement-A Review.Genes · 2026Review
- Leaf Na+ effects and multi-trait GWAS point to salt exclusion as the key mechanism for reproductive stage salinity tolerance in rice.Annals of botany · 2025Article
- Comprehensive Evaluation and Transcriptome Analysis Reveal the Salt Tolerance Mechanism in Semi-Wild Cotton (International journal of molecular sciences · 2023Article
- Seed Halopriming Improves Salinity Tolerance of Some Rice Cultivars During Seedling Stage.Botanical studies · 2022Article
- Evaluation of Green Super Rice Lines for Agronomic and Physiological Traits under Salinity Stress.Plants (Basel, Switzerland) · 2022Article
- Transcriptome Meta-Analysis Associated Targeting Hub Genes and Pathways of Drought and Salt Stress Responses in Cotton (Frontiers in plant science · 2022Article
- Germin like protein genes exhibit modular expression during salt and drought stress in elite rice cultivars.Molecular biology reports · 2022Article
- QTL mapping under salt stress in rice using a Kalarata-Azucena population.Euphytica: Netherlands journal of plant breeding · 2022Article
- Physiological and Transcriptome Indicators of Salt Tolerance in Wild and Cultivated Barley.Frontiers in plant science · 2022Article
- Unlocking Allelic Diversity for Sustainable Development of Salinity Stress Tolerance in Rice.Current genomics · 2021Review
- Trehalose treatment alters carbon partitioning and reduces the accumulation of individual metabolites but does not affect salt tolerance in the green microalgaPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Genome-wide association mapping of sodium and potassium concentration in rice grains and shoots under alternate wetting and drying and continuously flooded irrigation.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Genome-wide discovery of natural variation in pre-mRNA splicing and prioritising causal alternative splicing to salt stress response in rice.The New phytologist · 2021Article
- Genome-Wide Association Study (GWAS) to Identify Salt-Tolerance QTLs Carrying Novel Candidate Genes in Rice During Early Vegetative Stage.Rice (New York, N.Y.) · 2021Article
- Characterization of the transcriptional divergence between the subspecies of cultivated rice (Oryza sativa).BMC genomics · 2020Article
- Pyramiding QTLs controlling tolerance against drought, salinity, and submergence in rice through marker assisted breeding.PloS one · 2020Article
- Transcriptome Changes Induced by Different Potassium Levels in Banana Roots.Plants (Basel, Switzerland) · 2019Article
- Salt Tolerance Improvement in Rice through Efficient SNP Marker-Assisted Selection Coupled with Speed-Breeding.International journal of molecular sciences · 2019Article
22 more citing papers are in PubMed but not listed here.
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6 authors.
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Abstract
Rice yield is most sensitive to salinity stress imposed during the panicle initiation (PI) stage. In this study, we have focused on physiological and transcriptional responses of four rice genotypes exposed to salinity stress during PI. The genotypes selected included a pair of indicas (IR63731 and IR29) and a pair of japonica (Agami and M103) rice subspecies with contrasting salt tolerance. Physiological characterization showed that tolerant genotypes maintained a much lower shoot Na+ concentration relative to sensitive genotypes under salinity stress. Global gene expression analysis revealed a strikingly large number of genes which are induced by salinity stress in sensitive genotypes, IR29 and M103 relative to tolerant lines. We found 19 probe sets to be commonly induced in all four genotypes. We found several salinity modulated, ion homeostasis related genes from our analysis. We also studied the expression of SKC1, a cation transporter reported by others as a major source of variation in salt tolerance in rice. The transcript abundance of SKC1 did not change in response to salinity stress at PI stage in the shoot tissue of all four genotypes. However, we found the transcript abundance of SKC1 to be significantly higher in tolerant japonica Agami relative to sensitive japonica M103 under control and stressed conditions during PI stage.
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