ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2007
Characterization of terminal-repeat retrotransposon in miniature (TRIM) in Brassica relatives.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
17 citing papers in PubMed, 32 citations in OpenAlex.
- Hide and seek: de novo identification in sugar beet reveals impact of non-autonomous LTR retrotransposons.Mobile DNA · 2026Article
- The Cassandra retrotransposon landscape in sugar beet (Beta vulgaris) and related Amaranthaceae: recombination and re-shuffling lead to a high structural variability.Annals of botany · 2021Article
- The unusualProceedings of the National Academy of Sciences of the United States of America · 2020Article
- Terminal-Repeat Retrotransposons in Miniature (TRIMs) in bivalves.Scientific reports · 2019Article
- Elucidating the major hidden genomic components of the A, C, and AC genomes and their influence on Brassica evolution.Scientific reports · 2017Article
- Landscape and evolutionary dynamics of terminal repeat retrotransposons in miniature in plant genomes.Genome biology · 2016Article
- The Wukong Terminal-Repeat Retrotransposon in Miniature (TRIM) Elements in Diverse Maize Germplasm.G3 (Bethesda, Md.) · 2015Article
- BrassicaTED - a public database for utilization of miniature transposable elements in Brassica species.BMC research notes · 2014Article
- Genome-wide comparative analysis of 20 miniature inverted-repeat transposable element families in Brassica rapa and B. oleracea.PloS one · 2014Article
- Article
- Co-evolution of plant LTR-retrotransposons and their host genomes.Protein & cell · 2013Review
- A novel family of terminal-repeat retrotransposon in miniature (TRIM) in the genome of the red harvester ant, Pogonomyrmex barbatus.PloS one · 2012Article
- Dominant and pleiotropic effects of a GAI gene in wheat results from a lack of interaction between DELLA and GID1.Plant physiology · 2011Article
- BraSto, a Stowaway MITE from Brassica: recently active copies preferentially accumulate in the gene space.Plant molecular biology · 2011Article
- Karyotype and identification of all homoeologous chromosomes of allopolyploid Brassica napus and its diploid progenitors.Genetics · 2011Article
- Cassandra retrotransposons carry independently transcribed 5S RNA.Proceedings of the National Academy of Sciences of the United States of America · 2008Article
- Terminal repeat retrotransposon in miniature (TRIM) as DNA markers in Brassica relatives.Molecular genetics and genomics : MGG · 2007Article
Corrections and comments
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Authors and funding
14 authors at 5 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We have newly identified five Terminal-repeat retrotransposon in miniature (TRIM) families, four from Brassica and one from Arabidopsis. A total of 146 elements, including three Arabidopsis families reported before, are extracted from genomics data of Brassica and Arabidopsis, and these are grouped into eight distinct lineages, Br1 to Br4 derived from Brassica and At1 to At4 derived from Arabidopsis. Based on the occurrence of TRIM elements in 434 Mb of B. oleracea shotgun sequences and 96 Mb of B. rapa BAC end sequences, total number of TRIM members of Br1, Br2, Br3, and Br4 families are roughly estimated to be present in 660 and 530 copies in B. oleracea and B. rapa genomes, respectively. Studies on insertion site polymorphisms of four elements across taxa in the tribe Brassiceae infer the taxonomic lineage and dating of the insertion time. Active roles of the TRIM elements for evolution of the duplicated genes are inferred in the highly replicated Brassica genome.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.